BAC Information

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BAC

Clone NameMSMg01-453N16
Chromosome13 (Build37)
Map Location 96,431,458 - 96,432,108
singlet/doubletsinglet
Overlap geneIqgap2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r
Downstream geneF2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453N16.T7 (MSMg01no453_n16.b1)MSMg01-453N16.TJ (MSMg01no453_n16.g1)
ACCAG540769AG540770
length769793
length of high quality
(start - end)
655 (47 - 701)171 (77 - 247)
definitionCHROMAT_FILE: MSMg01no453_n16.b1 PHD_FILE: MSMg01no453_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:51 2005CHROMAT_FILE: MSMg01no453_n16.g1 PHD_FILE: MSMg01no453_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGTCTTGACTCCAGGGGCTTAGGTAATATTCCAAGAACTTCAG
TAAAGACTGCTAAAGTCGTTATGAATCAACTCACGGCAGCAGATCGAGGG
AAGAAATGATGGAGCCCAGGACTTTGTCGGTGACCTTCCTCAGGTTTTCA
ATAGATGCCTCCAGTTTATTCTTCACCTCCGGGTATGTCAGGGCTTGCTC
TGTGGTGACGTCGTAAGGCAGCTTGCTGAAATACAACATGGGTTCAAATG
AACAGTTGCCGAGGTACACATATGAGCACGAGCGTCCCACTAGCTGGCTC
TGTAGTCAAGCTCCATGGGATGAACTAGAGGTTGCCCATGACTCCAGCAA
GGGGGCTAAGTAAGATACACATAGTGCACTGTCCACTACTGATGAATCAG
GAAGGACTCTAAACATCCCTTCTAGCTCTAATGGAGTGATAAAGGGTAGA
CCAAGTTTTGTAGACTCAGCTAATAGTTTTTTCTTCCTTCCCTCCCTCCT
TCTTTCCCTCTCTCCCTCCTTCTTTCTGTCCCTTCTTTCCTCCCTTCCCC
TTTTCCTGATGACTGAACTCATAGCCTTGTACATGCTAGGTTAATGCTTT
ACTATTGAGCTGCAACCTCTACCCCTATTTTCTTTTTTAAAGTTTCTGAG
AATCTCAGTCTGGCTGGCCTTTAACGTTACCATGTAGGCGAGTACGTCAG
TTACTCTTCTGTTTGCATG
CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTGTAGACCAGGCTGGCTTCG
AATTCAGAGATTCTCCTGGGTCTGCCTCCTGAGTGCTGGGATTAAAGGCG
TTACATTTCTATTTTACTAAGTTGCTCAGGTGAACTTTTTTTGCCACTTG
GAGTTTGAGAATCATGGTTTTTTTTTGGGGGGGGGGGAGGGTGGAGNANN
NCNNNNNNNNNGNNNNGNNNNGNNNNNNNNNNNNNNGNNNNNNNNNNGNN
GNNNNGNNGGNGGGGGGGGGGGGTGTTGGNGGGNGGGGGGNGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGTGGG
GGGGGTGTTTTTTTTCCCTCTTGCCCCCCNTTGTCGGTTTTGTGTTCTTT
TTGGTGTTTTTCCCTTTTTCCCTTTTTTTCTCCGCTTTCGCGTCCCTTTT
GTTTTTTTTCTTTCTTTCTTTGGCCCTCTGCCTTTTCTTCTCGTGTTGTC
GCTCTCTTTGCTGCTTTCCGTTGCTCCTTTTCTTTTTTTTCGTTGGTTCT
TCCGCCCCTCTTCTCCCCTGTTCGTTTCGGCCCCTTTCGTCTCTTTCTGG
GGCTTGCCTTTTTTCCTCGTCCCCTTTTTCCTCTTTTTTTTCTGTTCCTT
TTCTTTTTTCCTTCGTTCGTTGTTCTGTTCTCTCCCCCTTTTGTTCTGCT
CTCTCTTTTTTCTCTCTTCGCTTCTTCGTTTCTTTCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_n16.b1 MSMg01no453_n16.b1 CHROMAT_FILE:
MSMg01no453_n16.b1 PHD_FILE: MSMg01no453_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:51 2005
         (655 letters)



>mm_chr13_96431254_96432308
          Length = 1055

 Score = 1259 bits (651), Expect = 0.0
 Identities = 651/651 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgtcttgactccaggggcttaggtaatattccaagaacttcagtaaagactgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtcttgactccaggggcttaggtaatattccaagaacttcagtaaagactgc 264

                                                                       
Query: 65  taaagtcgttatgaatcaactcacggcagcagatcgagggaagaaatgatggagcccagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaagtcgttatgaatcaactcacggcagcagatcgagggaagaaatgatggagcccagg 324

                                                                       
Query: 125 actttgtcggtgaccttcctcaggttttcaatagatgcctccagtttattcttcacctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actttgtcggtgaccttcctcaggttttcaatagatgcctccagtttattcttcacctcc 384

                                                                       
Query: 185 gggtatgtcagggcttgctctgtggtgacgtcgtaaggcagcttgctgaaatacaacatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggtatgtcagggcttgctctgtggtgacgtcgtaaggcagcttgctgaaatacaacatg 444

                                                                       
Query: 245 ggttcaaatgaacagttgccgaggtacacatatgagcacgagcgtcccactagctggctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggttcaaatgaacagttgccgaggtacacatatgagcacgagcgtcccactagctggctc 504

                                                                       
Query: 305 tgtagtcaagctccatgggatgaactagaggttgcccatgactccagcaagggggctaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtagtcaagctccatgggatgaactagaggttgcccatgactccagcaagggggctaag 564

                                                                       
Query: 365 taagatacacatagtgcactgtccactactgatgaatcaggaaggactctaaacatccct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taagatacacatagtgcactgtccactactgatgaatcaggaaggactctaaacatccct 624

                                                                       
Query: 425 tctagctctaatggagtgataaagggtagaccaagttttgtagactcagctaatagtttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctagctctaatggagtgataaagggtagaccaagttttgtagactcagctaatagtttt 684

                                                                       
Query: 485 ttcttccttccctccctccttctttccctctctccctccttctttctgtcccttctttcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcttccttccctccctccttctttccctctctccctccttctttctgtcccttctttcc 744

                                                                       
Query: 545 tcccttccccttttcctgatgactgaactcatagccttgtacatgctaggttaatgcttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcccttccccttttcctgatgactgaactcatagccttgtacatgctaggttaatgcttt 804

                                                              
Query: 605 actattgagctgcaacctctacccctattttcttttttaaagtttctgaga 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 actattgagctgcaacctctacccctattttcttttttaaagtttctgaga 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)