BAC Information

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BAC

Clone NameMSMg01-454K05
Chromosome13 (Build37)
Map Location 116,500,598 - 116,500,773
singlet/doubletsinglet
Overlap genenone
Upstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
Downstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454K05.T7 (MSMg01no454_k05.b1)MSMg01-454K05.TJ (MSMg01no454_k05.g1)
ACCAG541368AG541369
length746845
length of high quality
(start - end)
175 (329 - 503)162 (79 - 240)
definitionCHROMAT_FILE: MSMg01no454_k05.b1 PHD_FILE: MSMg01no454_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:53 2005CHROMAT_FILE: MSMg01no454_k05.g1 PHD_FILE: MSMg01no454_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCTAGAGAATCC
GCGGAATTCATAGATTTGCTTAAACATTATACACACACACACACACACAC
ACACACACGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTAATGATGATAAA
AATATCAGCATTTGATCAGTGGTCTCTGAAATGGAATGGTCATTGTCTCT
GCAGATGGATATTATCTAATCCACTGCGGAACTTAAAATAAGCTTAAATG
TGATAAAGGCACGTTTTCCCTCTCTCTCACTGCTGGCTACACACTGATGT
GAACTGGATCTAGTGCCATATTTCTTATTTGTAGGATTGGGGTCTCAGAT
CAATTGCTGTAGCCTTTGGCAAATCACAGACTATACTTTCATGATCACTC
TTTTTCAGACTGGTGTGATATAGATATATAGATTATAAGTAATAATATTA
CAGAGTGAAAAATCAACTTTCTGTTATTTTCTAATTTTTAAAGCCTATTA
AAACTGAAAATGAAGTCTTTTCGAAAAGAGTATTTAATTATACCTTCTAA
CAATTATGTTGTAAAGGGTCATTTTTATATTGAACATGTATATATATTAT
TAACAGACTCTCCTCATTTTCTTAAAAACCCCAAGGTTTTATATGCCCCA
TTATTTTTATTCCTTTTATTACCCTTTTTTAACAATCACATAATGTATAA
TATTTAAAAACACCTATTGTTTTAAATCTTTTGCCCCCGCTTTTTT
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCCCAT
TTTAAATTGGGTTATTTGGGTTTTTTGAACCACATAAAGATCAAGTTGCA
CATCTGCTACATAAGTGTTTGGGGGTGGGGTATAGACTTAATTTTAAACA
TATATAAAAGAACCTATGTTTGTTGTAAGTGTGTAAATGGGAATTCNCAG
NTNTGGTGTTCGGTTGGCAAGGCTTTTGGGGGACACACATTTGGGAACAG
CAAAGGTTAAAAAAAATGGGGTCCCCCCGAAAAAGGGGTGTCCTCCCATA
AATTTTCTTTCCTTCTTCTGTGCTTTCTTTCTTCGCTCCACTTTCCTTCT
TTTATCCCCCCCCCTTTTTTGCCCCCCTCTCAAATTTCTTTTTTCCATTT
TCTTTTTTTTCCTCTTATTTTTTTTTTTCCTTTTTCTTCGGTTATCGTAG
TAGCCTTCTTCTTACTCCATCTTTTTTTTTCTGCCCCCTCGCCTTTTTTT
GCTTCACTCCTCTTTTGTTTCGACCCTTTTTTCAGTACTCCGCCCCCCTA
CTTCTTGCTTTTTTCGCCTCCTGTATTTCTCCCCCCTCATCTTCCATTTT
CCTCCACGGTATTTTCTTCGCACTCGCTCTTCACACCTTTTATTAATTTT
ACCACTACCTTCCCTCTTATATCCCCCTCCTCCTTTTCTTATCTTTTTTT
TTGCTTTCCACTACAACCTTTGTGATTATTTTCCTTTCCACGCCTTTCCT
TTCTATTTTGTTTTCCGCTACACATCACTTTTATTTTTTTAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_k05.b1 MSMg01no454_k05.b1 CHROMAT_FILE:
MSMg01no454_k05.b1 PHD_FILE: MSMg01no454_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:53 2005
         (175 letters)



>mm_chr13_116500398_116500973
          Length = 576

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtaggattggggtctcagatcaattgctgtagcctttggcaaatcacagactatactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtaggattggggtctcagatcaattgctgtagcctttggcaaatcacagactatactt 260

                                                                       
Query: 61  tcatgatcactctttttcagactggtgtgatatagatatatagattataagtaataatat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tcatgatcactctttttcagactggtgtgatatagatatatagattataaataataatat 320

                                                                   
Query: 121 tacagagtgaaaaatcaactttctgttattttctaatttttaaa-gcctattaaaa 175
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tacagagtgaaaaatcaactttctgttattttctaatttttaaaagcctattaaaa 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 576
Length adjustment: 8
Effective length of query: 167
Effective length of database: 568
Effective search space:    94856
Effective search space used:    94856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)