BAC Information

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BAC

Clone NameMSMg01-455A02
Chromosome13 (Build37)
Map Location 33,248,089 - 33,248,728
singlet/doubletsinglet
Overlap geneSerpinb9c
Upstream geneGmds, Wrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301
Downstream geneSerpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455A02.T7 (MSMg01no455_a02.b1)MSMg01-455A02.TJ (MSMg01no455_a02.g1)
ACCAG541647AG541648
length621736
length of high quality
(start - end)
153 (77 - 229)648 (77 - 724)
definitionCHROMAT_FILE: MSMg01no455_a02.b1 PHD_FILE: MSMg01no455_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:23 2005CHROMAT_FILE: MSMg01no455_a02.g1 PHD_FILE: MSMg01no455_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGGATGGGGGCGCTAAACGATCATTCCGAGAGACCGGGAATCGTTTGAC
GTCAGATCAGGTATAGCCATCTATGTCGGAACTTGAGCAGTGGGAACTTT
GCATCCACATTTGGGAAAAAAAGCAAAGGTTTCGGCTCAATTCTTCTTTT
TACTCATTTAAACCCCAGCCCATGGAATGAGGCTGCCCTCTCTGGATAAG
TATTGTTATCTCAATTAACCTAATCAACAGGTGGGGGGTCAATCTCCCAC
GTGATTCTAGATCCTCAGTGACAAGGAATCTTCCCTCATGATCNNNNNNN
NNNGTTTTTTCTTGTGGGGGGGTTGGGGGGGTTTTATCCCCCCCCCAGTN
TTTCTTATAAGAAAAAAGGCTCTTATCTTATTATGTGTTGTTTGGTGTTT
TCTGTATTCCTTCTTATAACCCTTCTTATTACCCCCCCCTCTTAAGTTTT
TTTCTTTCTCCTTATTTGTTACCTCAAAAGCGCCTTGCCCTCCCCACTAA
TGCCCCCCCTCCCCCAACATTCATCCAGTATACAGTATTTACCTCCCTTT
TTCTTTTTTTTCTCACCGCGAGTAAATTTGACACTTTCCTTGTATATCTT
CTCCACTATTATCCTTTTTCC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCAGTAAGTTCTATTAGTAGA
ATGATAACAATTGTATTCAAATACTTGTTGGATAGATCACAGGAGAAGGA
CCCTAGAGGATTTGAGAAAACTAACGATCACATACTAGCCAATATGAAGG
TTCACATTTAGAATACCTACATTCAGAAAAGCTCAGGAGGGTCGGGAGTT
CTAGGCCAGGCTATGCTTCATAGTGAGATCCAGATACCTAACATCCCTCA
GAAGTAATTCCCATTTTCAAAGGCATAGAACATAAAGATGTTTTTGTTTA
AGTAGCATCTGTACTAATTTTAGTTTTGTTTTTAATGCAATATCAATCAG
AAGGTTGAAGAGCTTGCAGACATTTTATTTTGCAGTGTTACCTCACAACA
TTTTTTTCCTGCAAAGACATTTAAGGAGTCCTGTCTTCAGTTCTATCACT
GGGAGATGGAGCAGTTCCCCTTCACCAAGGCTCCAGAGGAGGCCAGGAAT
CACATAAACACATGGGTCTGCAAAAATACAAAAGGTGAGAATTTCAAGTT
GATTCACACTCCATATTTTTGTCCCTTCTATCCACTCCTTCCTCCTTCCC
TCCAATTTCTCATAATTTCCTCCCCCCTCCCCTCCACACACACACCATAG
ACTAATCTCACCATTATTTCTGAGTCAAGTTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_a02.g1 MSMg01no455_a02.g1 CHROMAT_FILE:
MSMg01no455_a02.g1 PHD_FILE: MSMg01no455_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:23 2005
         (648 letters)



>mm_chr13_33247681_33248728
          Length = 1048

 Score = 1181 bits (611), Expect = 0.0
 Identities = 634/643 (98%), Gaps = 3/643 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    agtaagttctattagtagaatgataacaattgtattcaaatacttgttggatagatcaca 65
            |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 1048 agtaagttctattagtagaatgataacaattgtattcaaatac---ttggatagatcaca 992

                                                                        
Query: 66   ggagaaggaccctagaggatttgagaaaactaacgatcacatactagccaatatgaaggt 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  ggagaaggaccctagaggatttgagaaaactaacgatcacatactagccaatatgaaggt 932

                                                                        
Query: 126  tcacatttagaatacctacattcagaaaagctcaggagggtcgggagttctaggccaggc 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  tcacatttagaatacctacattcagaaaagctcaggagggtcgggagttctaggccaggc 872

                                                                        
Query: 186  tatgcttcatagtgagatccagatacctaacatccctcagaagtaattcccattttcaaa 245
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 871  tatgcttcatagtgagatccagctacctaacatccctcagaagtaattcccatttgcaaa 812

                                                                        
Query: 246  ggcatagaacataaagatgtttttgtttaagtagcatctgtactaattttagttttgttt 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  ggcatagaacataaagatgtttttgtttaagtagcatctgtactaattttagttttgttt 752

                                                                        
Query: 306  ttaatgcaatatcaatcagaaggttgaagagcttgcagacattttattttgcagtgttac 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  ttaatgcaatatcaatcagaaggttgaagagcttgcagacattttattttgcagtgttac 692

                                                                        
Query: 366  ctcacaacatttttttcctgcaaagacatttaaggagtcctgtcttcagttctatcactg 425
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 691  ctcacaacatttttttcctgcaaagacatttaaggagccctgtcttcagttctatcactg 632

                                                                        
Query: 426  ggagatggagcagttccccttcaccaaggctccagaggaggccaggaatcacataaacac 485
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631  ggagatggagcacctccccttcaccaaggctccagaggaggccaggaatcacataaacac 572

                                                                        
Query: 486  atgggtctgcaaaaatacaaaaggtgagaatttcaagttgattcacactccatatttttg 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571  atgggtctgcaaaaatacaaaaggtgagaatttcaagttgattcacactccatatttttg 512

                                                                        
Query: 546  tcccttctatccactccttcctccttccctccaatttctcataatttcctcccccctccc 605
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511  tcccttctatccaccccttcctccttccctccaatttctcataatttcctcccccctccc 452

                                                       
Query: 606  ctccacacacacaccatagactaatctcaccattatttctgag 648
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451  ctccacacacacaccatagactaatctcaccattatttctgag 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)