BAC Information

Click to search

BAC

Clone NameMSMg01-455D14
Chromosome13 (Build37)
Map Location 27,521,957 - 27,522,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1
Downstream genePrl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455D14.T7 (MSMg01no455_d14.b1)MSMg01-455D14.TJ (MSMg01no455_d14.g1)
ACCAG541814AG541815
length721896
length of high quality
(start - end)
314 (314 - 627)---
definitionCHROMAT_FILE: MSMg01no455_d14.b1 PHD_FILE: MSMg01no455_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:40 2005CHROMAT_FILE: MSMg01no455_d14.g1 PHD_FILE: MSMg01no455_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAATTTGCGGCGCTAAAGGAGGGACATTCAAAAAGGGGGGNGGANNNC
NANTTACCTACAAAGGACGCCAAGNCTTTCCTTTCTTTTTTCCATATTGC
ATAAGTGTATTTTTCATTTCAACTCATTATTTGTCTTTTGCATGTATCAG
GATGCTATTGTGACTGACACTCACTGGAAATCCTTGCAAATCACTGACAT
TTTTAGAAGTAACCTTCTGTCACCCAGTTTCCTTTAAAGATTATGACAAT
GATATAAAACTATAACCTCAGATGCTTAAGATGTTCTTGAAAAGTTGTGC
TCTTANCTACTTTACCACAACCCCCTCAGATTGAAAAAGTCAAATATTTA
ACATATTACCATTGTTTCTAGTATTACTAGAATTAGTGTCCTACTTACAA
ATGTCTGATTAAATAACTATAAGTTTTGATTTATATTAATAAAAAGTCAA
TCATGTAAACTTCTGCCAGAGTAAATAGATTTTGTGTCACGTAAATGGAC
ACTTGATTTTCCAAAACCATACACTGTAAAAATTAAAATAGAAAACATAT
TCAACAAATAGTGATGGTCTAACAGGATGTCTGCAGATAAGAATATTCAA
AAACTCATATCTAACATCCTACAGAACATTTAAGCACAAGTGGATCAAAA
ATGTCACCATAAAACTAAATCTAATAGAAGAAAGCGTGGTGAATAGCTTT
GAACACAGTTTTACAATACAA
ATCTATCCTTTCTTTCCTTATACCTATTCTCCCTCCCTTACTTCTTCATT
CCCGCAAGCAAATGTATATCCCTGGCGGACGCCTTTTCCCAAAATTTATG
NGACACTATAGATTTTCCCGCGGAATTCTCATTTCCTGTTGTTGCATTCA
GTATCATAAATTTCCATTGGCCATGTTGATTTTGCACACTGCAGGTGCAC
TCTGTATAATATGTGCATTACAGTGAACTATATATTTGTAATAGATAAAC
TGAAGCATGCGAGGACACCAGATTGAAATTGATAGAAAGAAAGATTTAAA
GATAGAAAGAAAGAAAGAAAGAAATAAAGAACGAATGAAAGGAATATAAG
ATAGAATGAAGGAATGATTTTTATAAGTAACATAAGAAAGGAAGGAAGGA
ATGAAATAAATAAAGAAAGAATGATAAAAGCAACGGAGTTAGCTAGTTAG
TAAAAAACAATTTCATTATATTTCACCCCCCCTCCTTTTATTTTTTTTGC
AGTTTGTAATAATAATCTCTTTTTTTATATTCCCTCTTATACTAACGTAC
CATCCCATTTCCTATTCTTCTTTTATCCTTATATTTTTATTAATCAATTC
CCCATCCCGTCATTTTTACAATTCCTCACCCCCCTTTTTTCTTTTTATTT
CTTCTCAATAACCTCTCTTATTTTTATTTCCTCCTATATTCCTCTCACTT
TAAATATATTCCTCTATCTTTTTACCCCACCCCCCCTCCTATACTACCTT
TATTATATGTTAAACTCCCACACCATATTTTTTTCATTATATTTCTACAC
CAACATCACATTTCACTTACCATTTTTTATTTTATCACACCACGTCTTTC
TATACCTATATTTCCGATCTTTATATCTATTTATATCTCCTTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_d14.b1 MSMg01no455_d14.b1 CHROMAT_FILE:
MSMg01no455_d14.b1 PHD_FILE: MSMg01no455_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:40 2005
         (314 letters)



>mm_chr13_27521757_27522470
          Length = 714

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacaaccccctcagattgaaaaagtcaaatatttaacatattaccattgtttctagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 accacaaccccctcagattgaaaaagtcaaatatttaacatattaccattgtttccagta 260

                                                                       
Query: 61  ttactagaattagtgtcctacttacaaatgtctgattaaataactataagttttgattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactagaattagtgtcctacttacaaatgtctgattaaataactataagttttgattta 320

                                                                       
Query: 121 tattaataaaaagtcaatcatgtaaacttctgccagagtaaatagattttgtgtcacgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaataaaaagtcaatcatgtaaacttctgccagagtaaatagattttgtgtcacgta 380

                                                                       
Query: 181 aatggacacttgattttccaaaaccatacactgtaaaaattaaaatagaaaacatattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggacacttgattttccaaaaccatacactgtaaaaattaaaatagaaaacatattca 440

                                                                       
Query: 241 acaaatagtgatggtctaacaggatgtctgcagataagaatattcaaaaactcatatcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaatagtgatggtctaacaggatgtctgcagataagaatattcaaaaactcatatcta 500

                        
Query: 301 acatcctacagaa 313
           |||||||||||||
Sbjct: 501 acatcctacagaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)