Query= MSMg01no455_p02.b1 MSMg01no455_p02.b1 CHROMAT_FILE:
MSMg01no455_p02.b1 PHD_FILE: MSMg01no455_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:35 2005
(540 letters)
>mm_chr13_43811698_43812640
Length = 943
Score = 820 bits (424), Expect = 0.0
Identities = 454/466 (97%), Gaps = 7/466 (1%)
Strand = Plus / Plus
Query: 78 gccagctgagtacactccctctccagatcaagagccactgtgtaggcggtgggcattcag 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gccagctgagtacactccctctccagatcaagagccactgtgtaggcggtgggcattcag 337
Query: 138 acctcaggatgcctttgagctccagagaaagccaaccctactgtgcctgagaacaagagc 197
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 338 acctcaggatgcctttgagctccagagaaagccaaccccactgtgcctgagaacaagagc 397
Query: 198 ggaaggggtggaagctcacgatgcccctcctccctggaggctttcattctgctgaggagc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggaaggggtggaagctcacgatgcccctcctccctggaggctttcattctgctgaggagc 457
Query: 258 agaatgtagggaggcgagccagtgtctgggaggagccacagaaag----aaaaaaaaaac 313
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 458 agaatgtagggaggc-agccagtgtctgggaggagccacagaaagaaaaaaaaaaaaaac 516
Query: 314 atcagggacaacaggctcttttttaaaatgtcactctattatccaaacacactatggcag 373
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 517 atcagggacaacaggctcttttttaaaatgtcactcaattatccaaacgcactatggcag 576
Query: 374 tttgtggcccacagttctgagggaagtagagacagtgctgagtgacatgaagagggcaac 433
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 577 tttgtggcccacagttctgagggaagtagagacggtgctgagtgacatgaagagggcaat 636
Query: 434 gatggctaggcagattgacacagacacaggaggaggaaaggcaatg-tcgttcccttcac 492
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 637 gatggctaggcagattgacacagacacaggaggaggaaaggcaatggt-gttcccttcac 695
Query: 493 taccatgccacacaaacctacgaggccatacccgatgttatttatg 538
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 taccatgccacacaaacctacgaggccatacccgatgttatttatg 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 943
Length adjustment: 10
Effective length of query: 530
Effective length of database: 933
Effective search space: 494490
Effective search space used: 494490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_p02.g1 MSMg01no455_p02.g1 CHROMAT_FILE:
MSMg01no455_p02.g1 PHD_FILE: MSMg01no455_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:35 2005
(519 letters)
>mm_chr13_43972898_43973818
Length = 921
Score = 891 bits (461), Expect = 0.0
Identities = 501/515 (97%), Gaps = 2/515 (0%)
Strand = Plus / Minus
Query: 7 ttaaaaggtaagaggatgacacagtaggttttatgatttacttcccaaagtagcaaacta 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ttaaaaggtaagaggatgacacagtaggttttatgatttacttcccaaagtagcaaacta 862
Query: 67 tcacctcttctttattcagttcattagaagcgacctctaagttcagccatgactcagagg 126
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 861 tcacctcttctttattcagttcattagaagcgacctctaagtttagctatgactcagagg 802
Query: 127 ggaagcaaggagtgggagcaaagagctaaggagtcagaagtatcaaagacatagggaaga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggaagcaaggagtgggagcaaagagctaaggagtcagaagtatcaaagacatagggaaga 742
Query: 187 cattttaaatccgtcacagactgttccttcggttcaatttggcagactattttggacatt 246
||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 741 cattttaaatccgtcacaggctgttcctttggttcaatttggcagaatattttggacatt 682
Query: 247 cagtggcctttttctgatgtacttcttagatatgtaaattgtttgctccacaatctgga- 305
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 cagtggcctttttctgatgtacttcttaaatatgtaaattgtttgctccacaatctggag 622
Query: 306 -gggggggagcccactagcatcacctgacactgtaagaaacaggtggtgtgacacgaagc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 ggggggggagcccactagcatcacctgacactgtaagaaacaggtggtgtgacgcgaagc 562
Query: 365 tctgtggttctgagtgtttgacctcacagcacccactttgaagccattttcgttttctct 424
||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 561 tctatggttctgagtgtttgacctcatagcgcccactttgaagccattttcgttttctct 502
Query: 425 gcgcagcatgaagtgggctctcgctgagatccactttcaacctctctaacgcataatagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgcagcatgaagtgggctctcgctgagatccactttcaacctctctaacgcataatagc 442
Query: 485 aacagcactcgctacgaactgtgctaagagcaccc 519
||||||||| ||||||||||| |||||||||||||
Sbjct: 441 aacagcacttgctacgaactgcgctaagagcaccc 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 921
Length adjustment: 10
Effective length of query: 509
Effective length of database: 911
Effective search space: 463699
Effective search space used: 463699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
