BAC Information

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BAC

Clone NameMSMg01-456A03
Chromosome13 (Build37)
Map Location 111,047,073 - 111,047,571
singlet/doubletsinglet
Overlap geneRab3c
Upstream genePde4d, LOC100040968, LOC100040577
Downstream geneEG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159, 4732495G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456A03.T7 (MSMg01no456_a03.b1)MSMg01-456A03.TJ (MSMg01no456_a03.g1)
ACCAG542412AG542413
length738778
length of high quality
(start - end)
500 (68 - 567)180 (126 - 305)
definitionCHROMAT_FILE: MSMg01no456_a03.b1 PHD_FILE: MSMg01no456_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:40 2005CHROMAT_FILE: MSMg01no456_a03.g1 PHD_FILE: MSMg01no456_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXATACAACAGAGGATCCGCGGAA
TTCCTGTTCTCTGCTCAGAGCACACTGGTAAATACTGCCTTATATATAGT
TACTGCTGCATAGCAACACTGATCATTTATTTGTGACTATATTTAACACT
GATGTGTTGACATCTCTTGGTGGCTTAAAAACAATTTACTGCCCTTCACA
GCCTATTTTAGGCACTTATTTTAATGTCTAATTAATTTACTAAGACATCA
AAAAATATCATCTCACCATATTACACATTTCAAGACAAAGAAGGGAAGGA
GTTTCACAGTCTGGTAGCCGTTGAGGATCAGTCCACTGCACTACACTCTT
TACCAAGACAGGCTAAAAAGACCGTGGCCCTCTGAGGTGCTAGAAAATAC
CCTGGGGTGTTCAGATAGTAGGGTGGTTACCCAGAGCTGAAGAGAGTATA
CATTGGACAAGGGCACCAGCCAAGACCAAGTGAGGAGTCTCTTCAGTCAA
ATCCCTATCATTATTTAATTTCCAACAAAGATACCTAGCTTAGGAAACAA
GATCTAGAGAAGTTAAGTAAGTATAGTCCATGCCAGAGCAGAACCTTAAA
TCTGCATTTGCGACTTGGGCCCATCTGATTTTCTATGCTGAATTCACAGT
CCACATTAGGGTTGCACTCTGAAAACATCGACAAACTTCCTTTTCTGATT
ATCACTGGAAATAAACGCTCCATACTTACACTAATTCC
TTTTTCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGACCTCAGCCTCAGGTAT
AGTCAGCTACAGTATAGGTCCCTCCAGTCCCTTCATTTGGGTGAGTAATT
GATATACAGAAGTAACTATCAAGAATGGAGAGTTAATCGTAAATAGATAA
ACAAAGCAGCTGTTTTGAACTGAAAGATCCTGGCAGAATGTAAAAGGACA
CAGAAGCCCTGAAATTGGCAAGATAGACGTCAGTGTTAGCAGAACTAGCT
TCACTGATTTAGAAAAATAGAGGTGCTTTTGTGCTCTGGCCACTCCTTGA
ACCTGTGTGTCTGCCAATGTTCTGACCAGGTGTGTGTCCATTGTTGCACC
TTCATTATACTCTTTCCTTGTACCCCTTCCATATTTTTTTTCTTGTTTAT
ATACATTGTTTTTTATTTGCTTCCCCCTCTTATCTTCCCCTTCTCCCTTT
TTTCCTTGTAGGTCCCTTTTCTTTCTCGGTATCTTTTATCTCTCCCCGAA
TTTTTTATTTCTCTCTTCTCCCTGTTATGCATTTTTTACTTGTGTTTATC
TTATTTTCTCCTTGTCCTCTCTTTTTTCTTCCTATTTCCTTCCTACTACC
GCCTTTTCTTCCCATCAACTCCCTATTTTTCTCTCCCCCTTCTCTTTCTT
TTTCCCTTCTCTCTTCTCATCTCTTTTCTACCTACTTTATTTCACTCATC
TCATCTATTGCTGTGTATTCTCTACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_a03.b1 MSMg01no456_a03.b1 CHROMAT_FILE:
MSMg01no456_a03.b1 PHD_FILE: MSMg01no456_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:40 2005
         (500 letters)



>mm_chr13_111046873_111047771
          Length = 899

 Score =  890 bits (460), Expect = 0.0
 Identities = 490/500 (98%), Gaps = 1/500 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcacactggtaaatactgccttatatatagttactgctgcatagcaacactgatcatt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 699 gagcacactggtaaatactgccttatatatagttactgctgcgtagcaacactgatcgtt 640

                                                                       
Query: 61  tatttgtgactatatttaacactgatgtgttgacatctcttggtggcttaaaaacaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tatttgtgactatatttaacactgatgtgttgacatctcttggtggcttaaaaacaattt 580

                                                                       
Query: 121 actgcccttcacagcctattttaggcacttattttaatgtctaattaatttactaagaca 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 579 actgcccttcacagcctattttaggcacttattttaacgtctaattaatttactaagaca 520

                                                                       
Query: 181 tcaaaaaatatcatctcaccatattacacatttcaagacaaagaagggaaggagtttcac 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 519 tcaaaaaatatcatctcaccatattacatatttcaagacaaagaagggaaggaatttcac 460

                                                                       
Query: 241 agtctggtagccgttgaggatcagtccactgcactacactctttaccaagacaggctaaa 300
           ||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 459 agtctgggagccactgaggatcagtccactgcactacaccctttaccaagacaggctaaa 400

                                                                       
Query: 301 aagaccgtggccctctgaggtgctagaaaataccctggggtgttcagatagtagggtggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aagaccgtggccctctgaggtgctagaaaataccctggggtgttcagatagtagggtggt 340

                                                                       
Query: 361 tacccagagctgaagagagtatacattggacaagggcaccagccaagaccaagtgaggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tacccagagctgaagagagtatacattggacaagggcaccagccaagaccaagtgaggag 280

                                                                       
Query: 421 tctcttcagtcaaatccctatcattatttaatttccaacaaagatacctagcttaggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 279 tctcttcagtcaaatccctatcattatttaatttccaacaaagatacctag-ttaggaaa 221

                               
Query: 481 caagatctagagaagttaag 500
           ||||||||||||||||||||
Sbjct: 220 caagatctagagaagttaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space:   435610
Effective search space used:   435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)