BAC Information

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BAC

Clone NameMSMg01-456C08
Chromosome13 (Build37)
Map Location 11,207,841 - 11,344,647
singlet/doubletdoublet
Overlap genenone
Upstream geneChrm3
Downstream geneLOC100039648, Zp4, Ryr2, LOC100039678, Mtr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456C08.T7 (MSMg01no456_c08.b1)MSMg01-456C08.TJ (MSMg01no456_c08.g1)
ACCAG542517AG542518
length730832
length of high quality
(start - end)
456 (77 - 532)220 (77 - 296)
definitionCHROMAT_FILE: MSMg01no456_c08.b1 PHD_FILE: MSMg01no456_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:52 2005CHROMAT_FILE: MSMg01no456_c08.g1 PHD_FILE: MSMg01no456_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,207,841 - 11,208,293)(11,344,428 - 11,344,647)
sequence
GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACAGAGGATCC
GCGGAATTCNATATTCCAACTTTTTAAAAAATAACTAGTTCATCATTAAA
TATGGATTATTAATGATGGAGAATAAAAACTTGGATTGATAATAGAAAAA
AATTATGTGCTAAACAACTTTGTGAGAGAAATGAGCTGAGAGCAATGTCC
TGCCCTGATGGGAATAAGGAGGCCCCAATTCTGGCACACAGAGATCTCAG
TCAGACCATGCCATCATTGCAACTCTTGATTGGACTGGGGCCGTATGTCT
CAGTGGGCTCAGAAATTTTTTCTATGATCACAAAGATCTATTTTTCTAGA
GTCAATTGTGAAAAGAAATCATAGTGTTGTGTTGAACCTCTGCAAAGGGT
TTTAGATGAAAATAGAATTTAATCAGTTATTCAATGTGTAAATGAGAAAA
CTTTTCTTCAAACAAAAAGAAAGAAAACAAGGCAGAAAGTTTTTTATGCC
GTGGTAGGGAATTTTAATGTTTCAACTTANAAAGATAAAATTTTAAATAG
AACGAATTCTACAGGATTTAGACATGGCTTATACTAGTTACATAAATGAA
GAAGAGGAAAACACTCTTGAGAAAATATAGAAAATTAATACCGGCCAATG
CCCCTTGCACCATCAGCTCCTGGATTTGAACACTTGTTTTCCCATGGGGG
GGCTGTTTAGAAATGTCTGGAAACTATTCT
TTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAACTGCTGATCTGCTCTTCTGA
CTCAGCTTCCCATTGAAAGCCCAGCAGATCCCAAGAGGAGTCTGGAACAG
CCAGGAGCAGAAGAGAACTCAGGCAGCTGTGATCACAATGAGAACAGACT
CTTTGGGGATAGCTTCGGTAAGACAGCTCATTTAATAGGGCAGCAAAGGT
ACTTTTAAACATTTGTGGGGGAGGTAGGGACTTTTGGGATGAGTGTACCT
GATTTGTCTGGTGCCGTGTTTTTTTTTTTTTTTTTCCCTGTTTTATCTCT
CCTCTATTTCCGGTTCTTTTCTTTTCTTCGTCACTTGCTCCCTTTTTTCT
TTTTTCCTTCCCCTTTTCTTGTTATTTTCCCCCCTCGTTCCGCCTTTTCT
CTTTTTTTATTTCCTTTATTCGTTCCTTTTTCCTCTCTTTTTTTCTATCT
TCTACTTCCTTCCTTTCTCCTTTCTCTCTTTACTTTTTCCTTCCCCTTTT
TTTCTTCTCCATTTTCCTTCCTTTACTCTCTTCCATTTTTCTTTTTTTTT
TCACCTCCTTTCCCTCCCTTCTTTCCCCTTTTTATTCGTCTCTTTTTTTC
ATTCCGTTTATCCTTTCCTTATTCCTCCCCACTTATTTACTCTTTTTTTA
TTTCCTCCCATTTTCTTTCTTTTTTCTTCATCCTCCTTTTTCCCTACTCC
TCTTTTTGCTTATTTCCCTCTTCCTTTCACTCTTATATTCCCTCTCCATT
TTTGCTTTCCTCCTTCTTTTTTTCTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_c08.b1 MSMg01no456_c08.b1 CHROMAT_FILE:
MSMg01no456_c08.b1 PHD_FILE: MSMg01no456_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:52 2005
         (456 letters)



>mm_chr13_11207641_11208496
          Length = 856

 Score =  830 bits (429), Expect = 0.0
 Identities = 447/453 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaataactagttcatcattaaatatggattattaatgatggagaataaaaacttggat 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aaaaataactagttcatcattaaatatggagtattaatgatggagaataaaaacttggat 260

                                                                       
Query: 61  tgataatagaaaaaaattatgtgctaaacaactttgtgagagaaatgagctgagagcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataatagaaaaaaattatgtgctaaacaactttgtgagagaaatgagctgagagcaat 320

                                                                       
Query: 121 gtcctgccctgatgggaataaggaggccccaattctggcacacagagatctcagtcagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctgccctgatgggaataaggaggccccaattctggcacacagagatctcagtcagac 380

                                                                       
Query: 181 catgccatcattgcaactcttgattggactggggccgtatgtctcagtgggctcagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 catgccatcattgcaactcttgattggactggggccgtatgtctcagtgggctcagaaag 440

                                                                       
Query: 241 tttttctatgatcacaaagatctatttttctagagtcaattgtgaaaagaaatcatagtg 300
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccctctatgatcacaaagatctatttttctagagtcaattgtgaaaagaaatcatagtg 500

                                                                       
Query: 301 ttgtgttgaacctctgcaaagggttttagatgaaaatagaatttaatcagttattcaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgttgaacctctgcaaagggttttagatgaaaatagaatttaatcagttattcaatg 560

                                                                       
Query: 361 tgtaaatgagaaaacttttcttcaaacaaaaagaaagaaaacaaggcagaaagtttttta 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaaatgagaaaacttttcttcaaacaaaaagaaagaaaacaaggcagaaagtttttta 620

                                            
Query: 421 tgccgtggtagggaattttaatgtttcaactta 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 tgccgtggtagggaattttaatgtttcaactta 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no456_c08.g1 MSMg01no456_c08.g1 CHROMAT_FILE:
MSMg01no456_c08.g1 PHD_FILE: MSMg01no456_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:52 2005
         (220 letters)



>mm_chr13_11344228_11344847
          Length = 620

 Score =  410 bits (212), Expect = e-119
 Identities = 218/220 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaactgctgatctgctcttctgactcagcttcccattgaaagcccagcagatcccaaga 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 420 ctaactgctgatctgctcttctgactcagcttcccattgacagcccagcagatcccaaga 361

                                                                       
Query: 61  ggagtctggaacagccaggagcagaagagaactcaggcagctgtgatcacaatgagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggagtctggaacagccaggagcagaagagaactcaggcagctgtgatcacaatgagaaca 301

                                                                       
Query: 121 gactctttggggatagcttcggtaagacagctcatttaatagggcagcaaaggtactttt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cactctttggggatagcttcggtaagacagctcatttaatagggcagcaaaggtactttt 241

                                                   
Query: 181 aaacatttgtgggggaggtagggacttttgggatgagtgt 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaacatttgtgggggaggtagggacttttgggatgagtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)