BAC Information

Click to search

BAC

Clone NameMSMg01-457J01
Chromosome13 (Build37)
Map Location 23,600,148 - 23,600,533
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
Downstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457J01.T7 (MSMg01no457_j01.b1)MSMg01-457J01.TJ (MSMg01no457_j01.g1)
ACCAG543602AG543603
length758779
length of high quality
(start - end)
384 (51 - 434)388 (83 - 470)
definitionCHROMAT_FILE: MSMg01no457_j01.b1 PHD_FILE: MSMg01no457_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:49 2005CHROMAT_FILE: MSMg01no457_j01.g1 PHD_FILE: MSMg01no457_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCGCTACGGATTCTTACTTGGCAGGATCACTTGGAGCTGGTG
TACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTC
CCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGG
TCGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATGCGC
TCGAAGATGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAGGA
GATGCCCGTGTCGGGGTGCACTTGCTTCAGCACCTTGTACACGTACACCG
AGTAGCTCTCCTTGCGGCTGCGCTTGCGCTTCTTGCCATCCTTCTTCTGG
GCCTTGGAGACGGCCTTCTTGGAGCCCTTCTTCGGTGCGGGAGCGGACTT
CTTAGGCTCAGGCATCTTCTGATTCCCAAATACAGGAACCTCATTGTGGG
CTGTGAATGTATTTCTTCTACTTATTTTTCGTTCATGCTAATGTATCACT
TTCAATCTTCCTCTATTTTATTGTATTAACTTTAATTTATTGCCCCTAAT
GGCGTCCCACTTTCGGCTATGTCAATTCTCTGTAACTCTCTTTTTTTTTT
TTTTTTATATCTTTTTCTCACATCCCTTTCTTTTCCCCCAGCCTTCCCTC
TCTTTTTTATATTCCGGAAACTTCTCTCCTCCTTTCTCTTGCTTCCCCCT
CGTTTCTG
TTTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCCAGTTATCGATG
GCATCACTTAGGTTGAGACTGTTAGATTGTTAGACTCATTTGCTGTAGAC
TGTTTTCCCCTTTGTGTGTGTGTGTGTGAACAATGAAGTACACGTTTGAA
AAATAACCCTGACTGCCTGTCTGTGATGTGTAAGTCATAAAGATACAGAC
GTGAAGCTGGTCACCGCTACCCAGCTTTTCTTGTGCTCAGTTAAATTTGT
ATCTTTATTAGGCTTGCTTTTAAAAATTAAGATTGATTTACCAGACAAGT
TGTGACTGTGCACATTGTGGGGCCACTGTGGTGTTTTAATGTTGTGCGTG
TATTACACTATTTGAGATAGTCTGTCGGTGCAGCTGAGGCTGGTCTAATC
CTCCTGCCTCCGTTTCTAGAGTTTACAGACATGCACTTGACTTCCAATTA
TCTTTTATTTTTACTTGTAATCTTATCCTGTCTGCCCCCTCTGTCTATTA
ACCTTTGTGTTATTGGCCCTTCACGCCCTAAAATCTATTTTTGTTTTTTC
CCCCCCAATGTATTTTTTGTGTCCCTTATTTTTCTTTATTATTTTTTTCT
GATTAGTTTTTCCTCTTTCTCACTATCCTTTATTTTATTATTATATTTAT
TGCCCTTGTTTTGTATTTTCTTTATTTTTTTCTATCTCTTTTTCTATGTG
TCCCCTTTTCTTTTCGGTATTTCATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_j01.g1 MSMg01no457_j01.g1 CHROMAT_FILE:
MSMg01no457_j01.g1 PHD_FILE: MSMg01no457_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:49 2005
         (388 letters)



>mm_chr13_23599944_23600733
          Length = 790

 Score =  727 bits (376), Expect = 0.0
 Identities = 383/386 (99%), Gaps = 2/386 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   tccagttatcgatggcatcacttaggttgagactgttagattgttagactcatttgctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tccagttatcgatggcatcacttaggttgagactgttagattgttagactcatttgctgt 264

                                                                       
Query: 65  agactgttttcccctttgtgtgtgtgtgtgtg--aacaatgaagtacacgtttgaaaaat 122
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 265 agactgttttcccctttgtgtgtgtgtgtgtgtgaacaatgaagtacacgtttgaaaaat 324

                                                                       
Query: 123 aaccctgactgcctgtctgtgatgtgtaagtcataaagatacagacgtgaagctggtcac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaccctgactgcctgtctgtgatgtgtaagtcataaagatacagacgtgaagctggtcac 384

                                                                       
Query: 183 cgctacccagcttttcttgtgctcagttaaatttgtatctttattaggcttgcttttaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgctacccagcttttcttgtgctcagttaaatttgtatctttattaggcttgcttttaaa 444

                                                                       
Query: 243 aattaagattgatttaccagacaagttgtgactgtgcacattgtggggccactgtggtgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattaagattgatttaccagacaagttgtgactgtgcacattgtggggccactgtggtgt 504

                                                                       
Query: 303 tttaatgttgtgcgtgtattacactatttgagatagtctgtcggtgcagctgaggctggt 362
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 tttaatgttgtgcgtgtattacactatttgagatagtctgtcggtgtagctgaggctggt 564

                                     
Query: 363 ctaatcctcctgcctccgtttctaga 388
           ||||||||||||||||||||||||||
Sbjct: 565 ctaatcctcctgcctccgtttctaga 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 790
Length adjustment: 9
Effective length of query: 379
Effective length of database: 781
Effective search space:   295999
Effective search space used:   295999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)