BAC Information

Click to search

BAC

Clone NameMSMg01-458A01
Chromosome13 (Build37)
Map Location 50,976,755 - 50,977,338
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190
Downstream geneEG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458A01.T7 (MSMg01no458_a01.b1)MSMg01-458A01.TJ (MSMg01no458_a01.g1)
ACCAG543934AG543935
length740729
length of high quality
(start - end)
577 (80 - 656)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no458_a01.b1 PHD_FILE: MSMg01no458_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:27 2005CHROMAT_FILE: MSMg01no458_a01.g1 PHD_FILE: MSMg01no458_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAAAAAATTAGTCCTCATTTCACNTANACGACTCACTATTTTCCAGAACA
CCGCGGAATTCTCTGTTGTTCCCAGAACCTTATTATTTGTCAGGTTATTT
TGTTTGTTGGTGTCTATTTTCCTGAATTCTATACATATTCCTAACATGAA
TTTATCTGAAGGCAACAAATGTTGAACAATTGGTAAATTTGTTACTCTAT
TCTTGTGTTTCATTTTAAAAACTGTTCATTAGTTGATTGTTTTTATTTTT
GGTATTTAACTAATTTTAAATTTAAGTAATTCTTGTTTAAGTAATTCTTT
GAATATTCTAAATGTTAAGGCTCCACACTGTTTATTTCACTGTTAGCATG
ACCTCTCATCCTTTGAGCCTGTAATGCAAACATCTTTTATCTGCTTAATA
TAACCATTTAATTTAATGTAATTTCATTTTCAACTTATTGGGCTCTTGTC
TGTGCTATTGTTGTTCTTTTGTCCATTAATTTTTTTATTCACTTTACATC
CTGACTATAATCCCTCCTTCCAGTCCCACCTTCACAAATCTCTCTCCCAT
TACTCCCTTTCAGACACCCCACCTTTGGTACCAACCAACCCCAACAATCA
ACTGGAAGCAGGACTAAGTGCATCCTGTCCTACTGAGGTCTACCCATGCA
TTCCAGCTGGGGGAAGGGAACCCAAAGGCTGGCAATAGAGTCAAAGACAG
CTCCCATTCCAATTTTACAGGACTCACATGAAGCCAGAGN
GGGTTTCGAAGATAGGGGTAGGCCTGGGGGACGCCTGGTTCACAAATGTA
GGTGAACTATAGAATTGCAGAAAAATTCCTTACTGCCACCCATTCCTGTT
GTTTGCAGCTCTTCCCTAATTGCACCTGGCCTTGCAGAGGGTCTAAAGTG
TATATCCCAGGGAAGACTAGGGCAGGGGACCTCCAACTTACATAGATGTA
TGTAGAAGACATCACACTCACTGGGTACTAACTTTTCTAGTGCAGCTTTG
CTGTATGAAACACCCACACCCCTGTGGGTAACCACCAACCTAAGCTCTTT
AAGTGAACCCTATACACTTTTTGTTTTTCAGAGTGGATCATGTCTGCCTG
TGTCCCTGGGAGTTGAGGAAGGAGGGTAGATATTAAGTCTCCCCAGGGGA
ATAAATGCTATTGACACCTAATCTGGTAAACTTTTACTTCTTTTAATATG
TCAGGGTAGGAGGTGTCCAGGAGGACCTTACTCTACCATGATATGTGTGT
CATTACAGGAGGAGGAATGTCCAGTAGGACCTGATACCTATCCTTGTATT
TCAGGTGACACTGTCATCAGGGGGCTGTCTAGCAGATTCTGGTACCAGGT
ACTGCACATGCCACAGTGCAAGAGATGCTGTCAAGGCAGCAGTGACACCT
ACAAATTTATTGTTTGTCCTACCTGTCTTAAGCCAGCCAACATCTATCGG
GCGTTAATAGCGTACTTAGGCGCTCGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_a01.b1 MSMg01no458_a01.b1 CHROMAT_FILE:
MSMg01no458_a01.b1 PHD_FILE: MSMg01no458_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:27 2005
         (577 letters)



>mm_chr13_50976736_50977719
          Length = 984

 Score =  996 bits (515), Expect = 0.0
 Identities = 564/587 (96%), Gaps = 13/587 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattatttgtcaggttattttgtttgttggtgtctattttcctgaattctatacatatt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttattatttgtcagattattttgtttgttggtgtctattttcctgaattctatacatatt 544

                                                                       
Query: 61  cctaacatgaatttatctgaaggcaacaaatgttgaacaattggtaaatttgttactcta 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cctaacatgaatttatctgaacgcaacaaatgttgaacaattggtaaatttgttactcta 484

                                                                       
Query: 121 ttcttgtgtttcattttaaaaactgttcatta--------gttgattgtttttatttttg 172
           ||||||||||||||||||||||||||||||||        ||||||||||||||||||||
Sbjct: 483 ttcttgtgtttcattttaaaaactgttcattagttcatttgttgattgtttttatttttg 424

                                                                       
Query: 173 gtatttaactaattttaaatttaagtaattcttgtttaagtaattctttgaatattctaa 232
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 423 gtatttaactaattttaaatttaagtaattcttatttaagtaattctttgaatattctaa 364

                                                                       
Query: 233 atgttaaggctccacact--gtttatttcactgttagcatgacctctcatcctttgagcc 290
           ||||||||||||||||||  |   |||||||||||||||||||||||||||||||| |||
Sbjct: 363 atgttaaggctccacactggg---atttcactgttagcatgacctctcatcctttgcgcc 307

                                                                       
Query: 291 tgtaatgcaaacatcttttatctgcttaatataaccatttaatttaatgtaatttcattt 350
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 306 tgtaatgcaaacatcttttatctgcttaatataaccgtttaatttaatgtaatttcattt 247

                                                                       
Query: 351 tcaacttattgggctcttgtctgtgctattgttgttcttttgtccattaatttttttatt 410
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 246 tcaacttattgggctcttgtctgtgctattgttgttcttttgtccattaattttttaatt 187

                                                                       
Query: 411 cactttacatcctgactataatccctccttccagtcccaccttcacaaatctctctccca 470
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aactttacatcctgactatagtccctccttccagtcccaccttcacaaatctctctccca 127

                                                                       
Query: 471 ttactccctttcagacaccccacctttggtaccaaccaaccccaacaatcaactggaagc 530
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttactccctttcagacacaccacctttggtaccaaccaaccccaacaatcaactggaagc 67

                                                          
Query: 531 aggactaagtgcatcctgtcctactgaggtctacccatgcattccag 577
           |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 66  aggactaagtgcatcctgtcttactgaggtctacccatgcattccag 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 984
Length adjustment: 10
Effective length of query: 567
Effective length of database: 974
Effective search space:   552258
Effective search space used:   552258
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)