BAC Information

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BAC

Clone NameMSMg01-459A10
Chromosome13 (Build37)
Map Location 107,523,607 - 107,524,090
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668025, Olfr717-ps1, LOC631097, EG620949
Downstream geneIpo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459A10.T7 (MSMg01no459_a10.b1)MSMg01-459A10.TJ (MSMg01no459_a10.g1)
ACCAG544718AG544719
length7691,286
length of high quality
(start - end)
495 (38 - 532)---
definitionCHROMAT_FILE: MSMg01no459_a10.b1 PHD_FILE: MSMg01no459_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:47 2005CHROMAT_FILE: MSMg01no459_a10.g1 PHD_FILE: MSMg01no459_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXTCACTTCAGAAGAGGATCCGCGGA
ATTCAAAGCTACCCTCAGCCACATAGGGAATTTGAGGCCAATTAAACTTT
GTTATAAAACAATACAAAAACTCAGCATCTAACCAGAGGTTTGCTGGTAA
AGAGCAGAGACAGATGGTTGTCCCCACCTTAAGAATTAGTTCTGTGGGTT
TGTTAATCACATAGGTAAGAAAATGTCCTTCAGGGGAAGCTCCACATTCT
AGAGACTTTAGAAATATCAAGCCTACTTAAACTATAGGTAAACATAGTTT
CTTTGGCCATTGCCCACTCCCAGTCCTTAGGTTATTGTCCTCTGCAATGA
TTCCCTTGGCCACTGCCCACTATCCCACCTTGAGAGTGTTGTCCCTCACT
GTGATCTTAGTCACCATTGCTTCTTCACACCCTATGAGAATGCTTCCCTT
TACTCTCTGATGAATACCCAGCATCTCCTGTGCCATGTTCTTTGTGTCTT
ACCTGAGTTCTTGTGATGGAGAGCAAAGGACCAGCGAGCCAAGGGCAGGT
CAGCTCGGAGTGCAACTTCTATCCAGGTTTCTGTAGGGAAGACAGCTTGC
AATTTGTGCCTATAAGCACCCCTGGGTTAAATACATGTCACCCAGTTGTT
TGTGCTGTTGCTTTCCTACTGTGCCCCCACTGGTGGGCCGGTATAACACC
CCCCCCCAAAGAAACTCGCCTACTGCGGTCACCTGCCAATTATCTCTTTT
TTGGGGATATTTGCGAAAA
CTCCCCCACAGTGCTGCCGCGCGAGCGGTGCGAGCACAGCTGCTTATCGT
TCTGCGATTCTGGCGGGGGTGGTAGAAAGAGCATGCGCTGGCGCGGGGGC
GACTCACCACGGCGACGCACTAATCATGCTATAAAACCTCGCGACGTGCG
AACGCGGAACGCAATGGCTAAGAGCTCACGGAGTGCAAACGGAGAGGGAG
GCTAAACAAGACATAGGACCTTATAGCGTGCGTATCAAATATAAACTAAC
ACATCGAATTACAGTCAGAACGATCGCGCCGCCCTCTAATTTATATTTCG
TTACCTATCGGCACTCTCGCTCCCGTCCATGGACTAGATTCGCGATCCCG
CGCTGTAATATGAATCCTACTTTCTTCCGGCTCCCGGCCATCCTTATAAC
GTTTCTCGCGTACGCGCATATCCATTTCTCCTCCTTCCGCCGACCTTGAT
TCGGATATTAGCCGGGGTTATTCGGCTGCTTGTTATATTTTTGTAGTGCG
CTGCGGGCTTAGTGGTCCCGATCTCTCGCGCCCTTATTATATTTAATATC
CACACATTGCTCTCGCGACCACTACTTACTATACCGTCCCGCGAATTGCG
TGACCGACGCACACCAGTACCGTGTTTAACCGAACGATATACCCGTTCGA
AGTGCGCGTCTTATTATGGATCCGCTTCGCTATCTAATTCCATATTAAAA
CGTCGATCTCCACCTCGTATAGGAAGAGAGTGGTGACGAAATAATAAGAT
AGTATAATACTAATCCTCCTTCAAGAATTTCATACCTGCTTATCGAGATT
GTACAGTAACGCGCAATGTAAAGAAACGGTAGATGATCGGACCCGCGGAT
ATGGAAAACCTCAAGGTGTAGAACAGCGTTACATTTTCAGGACAATGTCC
GTAACCGTCATTTTGTTCTACATATCATACGTTTGACATACCGAACATAT
GCATAGTCAGTTACTCAACAATACGCGCCTTTACCGAGGCCTTCTTCTTT
GTTCTAGCCCGCTGATACGCTAGTGAGAAAGAAAGGCGACTAGATGTGAA
CAAGGTGCCTCCACTGCGACACCGAATCCAGTGTTTGGTGACATTCGTTG
CCGCCCCATACGCATTTATCAACATCTACATTCTATGTTGTGACTACAAC
ATTATGAAGCCCGCTCTCAAAGAACTAGCATCATTATAAATAAATGGCGG
TACTCTACTCCGCCTGAGTGAGAGCGGACCGCTAATAGAGATAATAATTG
ATTCACACCAGTCGGTTTTAGTGCTTCTTGTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_a10.b1 MSMg01no459_a10.b1 CHROMAT_FILE:
MSMg01no459_a10.b1 PHD_FILE: MSMg01no459_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:47 2005
         (495 letters)



>mm_chr13_107523396_107524290
          Length = 895

 Score =  882 bits (456), Expect = 0.0
 Identities = 477/484 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattcaaagctaccctcagccacatagggaatttgaggccaattaaactttgttataaa 71
           ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 212 gaattcaaagccagcctcagccacatagggaatttgaggccaattaaactttgtcataaa 271

                                                                       
Query: 72  acaatacaaaaactcagcatctaaccagaggtttgctggtaaagagcagagacagatggt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acaatacaaaaactcagcatctaaccagaggtttgctggtaaagagcagagacagatggt 331

                                                                       
Query: 132 tgtccccaccttaagaattagttctgtgggtttgttaatcacataggtaagaaaatgtcc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtccccaccttaagaattagttctgtgggtttgttaatcacataggtaagaaaatgtcc 391

                                                                       
Query: 192 ttcaggggaagctccacattctagagactttagaaatatcaagcctacttaaactatagg 251
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 392 ttcaggggaagctccacattctagagattttagaaatatcaagcctacttaaactatagg 451

                                                                       
Query: 252 taaacatagtttctttggccattgcccactcccagtccttaggttattgtcctctgcaat 311
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 452 taaacatagtttctttggccattgcccactcccagtccctaggttattgtcctctgcaat 511

                                                                       
Query: 312 gattcccttggccactgcccactatcccaccttgagagtgttgtccctcactgtgatctt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gattcccttggccactgcccactatcccaccttgagagtgttgtccctcactgtgatctt 571

                                                                       
Query: 372 agtcaccattgcttcttcacaccctatgagaatgcttccctttactctctgatgaatacc 431
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 572 agtcaccattgcttcttcacaccctatgagaatgcttcactttactctctgatgaatacc 631

                                                                       
Query: 432 cagcatctcctgtgccatgttctttgtgtcttacctgagttcttgtgatggagagcaaag 491
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 632 cagcatctcctgtgccatgttctttgtgtcttacctgagttcttgtgatagagagcaaag 691

               
Query: 492 gacc 495
           ||||
Sbjct: 692 gacc 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)