BAC Information

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BAC

Clone NameMSMg01-459K21
Chromosome13 (Build37)
Map Location 22,472,884 - 22,473,229
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3
Downstream geneV1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459K21.T7 (MSMg01no459_k21.b1)MSMg01-459K21.TJ (MSMg01no459_k21.g1)
ACCAG545215AG545216
length806786
length of high quality
(start - end)
347 (65 - 411)328 (71 - 398)
definitionCHROMAT_FILE: MSMg01no459_k21.b1 PHD_FILE: MSMg01no459_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:41 2005CHROMAT_FILE: MSMg01no459_k21.g1 PHD_FILE: MSMg01no459_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTGGTTTTCCTGCCCAGAGCATTATTCACTGTGTTCAGATATTTAGGAT
GATGTTGTGTTTTCCATGATGCTGTAGAGGAGCAGATGAAAGGCAATAAC
TGACTTTTAGAGTCATGAAGCCATCTGGACACAAACCTAGGGAAGAAACC
AGGTTCACACATACCAAGTGTGCAATCACCAGGGTATAGACATTTAAATA
ATCTTGTGAGCTTGACAGGAAGGAAAGCAAGGAACAGAGGCATTCCAAGT
ACTCAGAACACACAATTTTCTTGGAGACACTGAAGCGATCCAGATTGCTC
TTATTCTAGGAAAGTTGCCCAAAGCTTGCTAAAAATAGCCACGGTATGAG
AATGGAGCTCCAAACATCATACTGCTGAGGTTTAAGTTCTGAAATCAGCC
TAAAATTGCGGCACAACATATTTCCCCTGCCTGACCACCCGCCTTGCGAA
ACTAACACGCAGACCAACACCTTTTTAACCTACGTTGACCTATTCCCTGG
TCTCCCTTTCTCCTTTTACGCCAAGCTCTTTCTTTCCTCTTTCCACGGCT
TTTCTCCTCGCTTCTCCTTCCTCCCCTCCTTTCTTCCCTTCCTTTCTTCT
TCCCCAACTCCTATTTCTCCCCCTATTTTTTCCTCCCTTTTTTTATTCGA
TTATCTCTGTTATCCCCCTTCTCTTTCCCCCTCTTATTCTATCTCCTTTT
TCTTATTTACCCCCCCCTTTTTTCCCTCCCCGCCCTTCCTTTTCTTTTCT
CTCTTT
TGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCACTTTTCCTGCCTCAGGCTCTGGGCTAG
ATCCAGCCTTTAGACCCCCCACTTCATCCTCAGCTATTCCGCACTTCCCA
GTGGTGCCTAGGTGTCCAAGAACTGGAGAACCAAATGGCCCCGAACCATC
TACACCTGCCCCATACCTCAGAATGTGCTCCACCCCCTCACCCCCTCTGG
AGCAGTGTCCTGGAGTTTCCCTATGGCCCGATAGCCACCCAGTGACAGCG
TGGGGTCAGCCTTGTTGACTTCCGGTGCCCTGCCTCCCCAAACAGTTGAG
CCCTGTGGTAGAGCAGATGAGGGACTGTGTAATCCTAGAACTGGTGCCAA
CATGGTCTGTAACCTAGCTTGGCATTACTAAAATTTACCCCAGAGGACCT
ATTTTGAGAAACCCCCCACCCAAAACTGTTGAATGAATTTCTCTGGGGAA
AATTTCACTCCTGGTCCCTTATAAAAACCAACCTTGCGTCCTTTTCTCTC
TTGCTTCCCCCCCCCCTTTTATCTTTCTTCTTACTCTTTTTTTTTTTTCT
TTTCCCCCTTTTCCCCCCCGCCTTTTTTTCTTATTTTTTGATCATTCACA
TTCCCTTCCCCTGTCCTCCCCCATACCCTTCTCCCCTTTCTGCCCCCTCC
GTCTCAACTCTTTCCTCTAATTTTATTTCTTCCGCTTTATATTTCTTTCT
ATTTTTCCTCCTTCTCTCTCCTTTTTTTTCCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_k21.b1 MSMg01no459_k21.b1 CHROMAT_FILE:
MSMg01no459_k21.b1 PHD_FILE: MSMg01no459_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:41 2005
         (347 letters)



>mm_chr13_22472684_22473429
          Length = 746

 Score =  634 bits (328), Expect = 0.0
 Identities = 342/350 (97%), Gaps = 7/350 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagagcattattcactgtgttcagatatttaggatgatgttgtgttttccatgatgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagagcattattcactgtgttcagatatttaggatgatgttgtgttttccatgatgctg 260

                                                                       
Query: 61  tagaggagcagatgaaaggcaataactgacttttagagtcatgaagccatctggacacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaggagcagatgaaaggcaataactgacttttagagtcatgaagccatctggacacaa 320

                                                                       
Query: 121 acctagggaagaaaccaggttcacacataccaagtgtgcaatcaccagggtatagacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctagggaagaaaccaggttcacacataccaagtgtgcaatcaccagggtatagacatt 380

                                                                       
Query: 181 taaataatcttgtgagcttgacaggaaggaaagcaaggaacagaggcattccaagtactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaataatcttgtgagcttgacaggaaggaaagcaaggaacagaggcattccaagtactc 440

                                                                       
Query: 241 agaacacacaatttt---cttggagacactgaagcgatccagattgctcttattctagga 297
           |||||||||||       | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacacacaa----acccatggagacactgaagcgatccagattgctcttattctagga 496

                                                             
Query: 298 aagttgcccaaagcttgctaaaaatagccacggtatgagaatggagctcc 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagttgcccaaagcttgctaaaaatagccacggtatgagaatggagctcc 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 746
Length adjustment: 9
Effective length of query: 338
Effective length of database: 737
Effective search space:   249106
Effective search space used:   249106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)