BAC Information

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BAC

Clone NameMSMg01-461C18
Chromosome13 (Build37)
Map Location 113,229,653 - 113,230,116
singlet/doubletsinglet
Overlap genenone
Upstream geneGpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725
Downstream geneIl6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461C18.T7 (MSMg01no461_c18.b1)MSMg01-461C18.TJ (MSMg01no461_c18.g1)
ACCAG546357AG546358
length753753
length of high quality
(start - end)		464 (67 - 530)486 (71 - 556)
definitionCHROMAT_FILE: MSMg01no461_c18.b1 PHD_FILE: MSMg01no461_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:40 2005CHROMAT_FILE: MSMg01no461_c18.g1 PHD_FILE: MSMg01no461_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCAGAAGGATTCCCAATTCCAACCACTCTAGAGTCGCCATCCCCGAAGG
CAAAGAGACTTACTAAGTGGGCAGATAACCGAGATTATCATAGATGATTG
CAAATTCCCTGAAGAAAAGAAACAGGATGTGCTGAGAGCCGCCAGGATCA
AGATACAGATAACAGAAAGGAAGCCTGGGTGCCACCAGCTGCACACACGT
GCTAAGAGAGAGGGAAAGAGGAAACTGCAATCTAGAAGCCCCCGGAGTTG
AAGCGCTCTTGCTATGTTATAGGGAAGGGAAACGCACGAGCGTGGAAGAA
ATAACAAAGAACCAGTAGAAGAGGGAGTGGAAAGGACAGACTCCAGGCCA
GGCAGAGCTGGAGTTTTATTCCAACTACTAGAGTTCTGAAAGTCTTCATT
AAAGAAGTGCATCCCGGTTTACATTAAACATTAATCTGCGAACTTAATAG
AAGAGGAAGCGGCATTCAGGAAGCTATTAGAAGAGCCGTTAGTGAGAGTT
GCTGTGGATAACAGGGAAGATGGAGAAGTCACGGTCTGACTTCTCAGAGA
GATGAATAAGTTCTCACTGTGGTGAGCCGCTACTTTGCAACTTTTCTCTC
CCATGTANAGAATGTGGCCGTGGCCCTTGCCCCAGAAAAAGAGGGGCTGT
GGTCCCTTTCCTCTCATATGGGGAAGGGGCGTGCCCCTTTCTCTTTTTAC
GTT

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGATCTCTGCCTCCCAAGTGCTGGGATT
AAAGGTAGTTCTTTATATATTCTGTATATTAATCCTCTGTCATGTGTAGC
TGGGAAAGATGCTTTCCCATTCTATAGGCCTCCTCTTCTCCCAATTAGTT
TCTTCAGCTGTGCAGAAGGTCCCACTTGTTAATTGTTGGCCTTAATTCTT
GGATAAATTAAGTCCTAGTCAGAAAGTCCCCTCCTAGTGCTCAACTGTGT
GGGGCACTGCCTCTGTTCCTCTAGCAGTCTCAGTGTCCCAGGTTTCACAT
TCAGGTTTTTGACCTATTTGGAGTTAATTTTGTGCAAAGTGATAGATAGC
AGTCTAACTGCTTGTGGGCCTCTAGCTTTCCCAGCACCATTGTGGAGGGT
GTTTTCTCTCCAGTATTTCTTTTTGGCTTCTTCATCAATACTACGAGGCT
GAAGTTATGAGTAATCGTGCTTCCGTGCTGTTCCGTGGTCTACACATCTG
TTTTGTGCCAGTGTCATGTTCTTATTGTCATGGCTCTGCACCATGTCTTA
AGATCTGGAATAGCCATTCCTTCCNNATTGCTTTTGCTGCATCATAATTG
TACTGCCCATCTGCAATCTTTTGTGGCTCCAGTCGTATTTTATGGACAGT
TTTTCTTCCTTCTCTTCACCCTTTGCTTTCTTACCTATTATTTTTCTCTT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_c18.b1 MSMg01no461_c18.b1 CHROMAT_FILE:
MSMg01no461_c18.b1 PHD_FILE: MSMg01no461_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:40 2005
         (464 letters)



>mm_chr13_113229453_113230316
          Length = 864

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccaaccactctagagtcgccatccccgaaggcaaagagacttactaagtgggcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccaaccactctagagtcgccatccccgaaggcaaagagacttactaagtgggcagat 260

                                                                       
Query: 61  aaccgagattatcatagatgattgcaaattccctgaagaaaagaaacaggatgtgctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccgagattatcatagatgattgcaaattccctgaagaaaagaaacaggatgtgctgag 320

                                                                       
Query: 121 agccgccaggatcaagatacagataacagaaaggaagcctgggtgccaccagctgcacac 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcggccaggatcaagatacagataacagaaaggaagcctgggtgccaccagctgcacac 380

                                                                       
Query: 181 acgtgctaagagagagggaaagaggaaactgcaatctagaagcccccggagttgaagcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 acgtgctaagagagagggaaagaggaaactgcaatctagaagcccccggggttgaagcgc 440

                                                                       
Query: 241 tcttgctatgttatagggaagggaaacgcacgagcgtggaagaaataacaaagaaccagt 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 441 tcttgctatgttatagggaagggaaacgcacgagcctggaagaaataacaaagaatcagt 500

                                                                       
Query: 301 agaagagggagtggaaaggacagactccaggccaggcagagctggagttttattccaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagagggagtggaaaggacagactccaggccaggcagagctggagttttattccaact 560

                                                                       
Query: 361 actagagttctgaaagtcttcattaaagaagtgcatcccggtttacattaaacattaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actagagttctgaaagtcttcattaaagaagtgcatcccggtttacattaaacattaatc 620

                                                       
Query: 421 tgcgaacttaatagaagaggaagcggcattcaggaagctattag 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcgaacttaatagaagaggaagcggcattcaggaagctattag 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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