BAC Information

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BAC

Clone NameMSMg01-462A01
Chromosome13 (Build37)
Map Location 43,362,630 - 43,362,952
singlet/doubletsinglet
Overlap geneGfod1
Upstream geneEdn1, Hn1-ps4, Phactr1, Tbc1d7
Downstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462A01.T7 (MSMg01no462_a01.b1)MSMg01-462A01.TJ (MSMg01no462_a01.g1)
ACCAG546992AG546993
length7261,354
length of high quality
(start - end)
323 (337 - 659)---
definitionCHROMAT_FILE: MSMg01no462_a01.b1 PHD_FILE: MSMg01no462_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:50 2005CHROMAT_FILE: MSMg01no462_a01.g1 PHD_FILE: MSMg01no462_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAAACTTAATACTCGTGTCCGNTAAAAGAANNANTATATTTTCGAAA
AGCCGCGGAATTCAAGGCCAGTTTCGTCAACAAAGTGAGCTCCAGGACAG
CCAGGGCTATACAGAGAAAACCTGTCTCGAAACACAAAAAACAAAAAGCA
AATCAAAAAAAAAAATTAAAATTACAACAGAGATAATGAGATACTAGTAT
TGTTCCAGGAGCATAAAGATAGTCCACAGACCCTCACAGTCCTGGAAAGA
GACCACCACCAAACTCCTACTGTTCACCCATTAGCTAGTCCTTTTATGGT
TTGTTGCATCAGCTCTTAGAAAGAAAGTATTATTTTACCGAATGACTAAA
ACCTCCAAGAACAACACATAACCCCACAGACAGCCCAAGCAGAGGATGAT
AGTTGCATCCCAGTCATCCTGAGGAGAGAAGAGGGAGGATGTTAACAGGG
CCCTCCTCTGCCCCGCCCCCATCCTACTTCCCAGCCCTTCTGTGATGCCT
CTTTTAAACCAAATCAAAGCGAAGCACCACTGAGCAGGCTGGTACAGACC
TGCCATCCTAACCAACTTAGGAGGTTGAGGCAGGAGGATCACACATTCAA
GGCTAGCCTTGGACCACTTAGTGAGACCCTGTCTTAAATGGAAAGTGGTA
AGAAGAGAGTCAGAGATGGACCTCAGTGACAGAGCACACACCTAGTGCAT
GAGGCCTTGGGTTCACTCAATCCCTG
ATATATAAATATAATTATTCATATATTCAAATAANCATAACTAACCATCT
CCCACCTTCTTCTATATATCTCACTGACAAACAACCGAACGCACTACTAA
CATACCTACTCACANAACCCACCCACCCACCACTCATACACCTTCTCACA
CACATCCTATATATCAATACACCCACCTTAACATCTCATCAAACTTATTT
CAACCAACATTCACCTATCCTCCACCATTTCCACCCTCTCTTTCCTTCCC
CCTCTCCCTCCCTTCCTATCTATACTTTCTCTATCTTCTCTTCNCATCTC
ATATCTCCTCTACTTACTCAATCATTAACTAACATATCATCATCACTATA
TTACACACCAATATTCTAATCCTCTCTCTCTCTCTTCTTATTCCACTTAT
ACCCTCCGTATCTATATAATTCTTACATTTATCAAATTACAACACATATA
TATTTTCATCATATCTTCTATATATTTATACGCATTTCTACCTACCTAAC
AAATCTATAACACCTTATACTACTTACTCATATAAACACTCCATACATTA
CAATAAAACACCGTATANTACAACACGATACGTCATACTTATTATCCTCA
CACAAAATCGATATATTATATATTAGTTATCCAAATACACATCTCCTACC
TCCACACTAATCAAATAATAAACAACACGATACCACAACCAACATAAACA
AGACATAATATCTCATTTATTCCTACATTACTATCACGACACNCACTCGT
CTTCACTCACCTTTATCACGTTATTTTACATTTTTTTATAACCGACATTC
ATACGCCATCCCTATCACCATTAATTATATATACTATCATACACTCAAAT
ATATCCATTACTTCCACCCTACTATACCCACTACATTATTATTCCATCCC
ATACATCTCTTATAACAACACACCACACTACATTCTACCTACATAAACCA
CATATATTTCATTCCCACACTACTTATCATTACACATCACAACATTATAT
CTTCTACACCTACTACTCTATACATACTTATTTACCTGATCATCATCGTA
CGCACCTANCACATTATAACCTCACACATCACACACTCTCACTTACTACA
CTACTCAACCAACACACATATGCTACTCCACGACAAAATGATATATATTA
CACACGTCTACACACATCGCTTTATCTACAAATTAATACATTCTACCACT
CTATATATACTCATATCTCTATTATACACACTCCTAGCATCCATCTATAT
CTATACCAACTCTACCACCTCAACTCCACTGATGTGTATCACCATTCACC
TATATCACACAACACACTAATATATCTCATGACACCACACATCTATCATC
TATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_a01.b1 MSMg01no462_a01.b1 CHROMAT_FILE:
MSMg01no462_a01.b1 PHD_FILE: MSMg01no462_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:50 2005
         (323 letters)



>mm_chr13_43362430_43363152
          Length = 723

 Score =  611 bits (316), Expect = e-179
 Identities = 322/324 (99%), Gaps = 2/324 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accgaatgactaaaacctccaagaacaacacataaccccacagacagcccaagcagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accgaatgactaaaacctccaagaacaacacataaccccacagacagcccaagcagagga 260

                                                                       
Query: 61  tgatagttgcatcccagtcatcctgaggagagaagagggaggatgttaacagggccctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatagttgcatcccagtcatcctgaggagagaagagggaggatgttaacagggccctcc 320

                                                                       
Query: 121 tctgccccgcccccatcctacttcccagcccttctgtgatgcctcttttaaaccaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgccccgcccccatcctacttcccagcccttctgtgatgcctcttttaaaccaaatca 380

                                                                       
Query: 181 aagcgaagcaccactgagcaggctggtacagacctgccatcctaaccaacttaggaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcgaagcaccactgagcaggctggtacagacctgccatcctaaccaacttaggaggtt 440

                                                                       
Query: 241 gaggcaggaggatcacacattcaaggctagccttggaccacttagtgagaccctgtctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggcaggaggatcacacattcaaggctagccttggaccacttagtgagaccctgtctta 500

                                   
Query: 301 aa-tggaaagtggtaagaagagag 323
           || || ||||||||||||||||||
Sbjct: 501 aaatg-aaagtggtaagaagagag 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)