BAC Information

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BAC

Clone NameMSMg01-462K20
Chromosome13 (Build37)
Map Location 24,792,674 - 24,793,168
singlet/doubletsinglet
Overlap gene6330500D04Rik
Upstream geneHfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik
Downstream geneLOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462K20.T7 (MSMg01no462_k20.b1)MSMg01-462K20.TJ (MSMg01no462_k20.g1)
ACCAG547508AG547509
length753840
length of high quality
(start - end)		496 (51 - 546)131 (80 - 210)
definitionCHROMAT_FILE: MSMg01no462_k20.b1 PHD_FILE: MSMg01no462_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:46 2005CHROMAT_FILE: MSMg01no462_k20.g1 PHD_FILE: MSMg01no462_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCANAAATC
CGCGGAATTCATAAAATTACCAGCGTCCCCACTCATTCTTAAAGTGCATG
GGAAAAATGTCAAACCTAAGAATAGCACTGTGACCTTTCACCTAGGTCCA
ACAATGGCAACCATTTTTCATGGCTTGTTTTCCCTTTGCCTGCATACACA
CACATATCAAATAAATTGGTAACGTTAAAGCATTTTCATCTTAACTGCCT
CCCCTCTTGACTGGAGGTGAACCATGCCAAATGTATCATCTCCTATCTTT
CTCCACAGTCAAATCTGCCAGATGACATCTTTGAGAGTGGAAAGGCTGCA
GAGGAGAAAAGGCCACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGA
CTGTGTCTTCACCTCCAGCTCAGCCACCTCCCCCTCCAGTTCACACTCAG
CCCATCCAGAGATTACCATCACCCCCGCAGAGCTTACCCACAGCAGCCTG
TCCTCACAAAACGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAA
TTCCTTGTGTGAGGACCATGAACCCAAGTCCCACCCAAAGAGTGATACGT
TAGAAGCCAGGAAGCCGGGTGTGGCTACAAGGACTTGTACTGAAAGCCTG
TTTCTGTAAAATAAGGGGCCCGAAATTCCCCTGGCAAAAACGAAAAAGGC
CTCCAAAATCAACCCCCGGAAATGACCTTTTTTAAGAAACAATCCCAAAA
AAC

NNTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTTAACAACCTCCCTAA
ACCAAGAATAGATGAATGGATGATAAATGATAGACATACATACATACATG
CATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAG
AGAGAAAGCTCTCTTTCTCTCCTTTTTTCCCTTCCTCCCTCTCTTTTCCT
GCTTTTTTTTTCCCCTTTTCCTCCCCTCGTTTTCTTTTGCCTTGTGTCTT
CCCCCTTCCGCGCCCGGTTTTTTTTTTTTTGCCTCCCGCGTTTCCCCTCC
CTGCTCTTTTCTTTTCTCCTGCCTTCTCCTCCTCTTTTTCCCCCCTTTTC
CTCCTTCTTTCTTTTCTTTCCTCCCCCCCCCCCCCCTTTTTTCGCCCCCG
TCCCGTGTCCTTTGTCTTCCTCTCTTCCCCCCTTCCCTTCCCTCTTCTCT
TCTCCTTTCTCTCCTTCTTTCTTCTCTTTTTTCCTTCTTCTCCTTCTTTC
CCTTTCTTTTTCTTTTTCCCTTCCTTTTTCTCTTTCCTTTTTCTTCCCTT
CTCTGCCCCTCTTCTTTCTCTTTTCCTTTTTTTTTCTCTTTCTCCTTTCT
TTCCCCCCCTTTTTTCCTTCCCCCTTTCCCCCTTTCTTCCTTTCCTTCTT
ATTCTTTCCTCCTTTTTTCTCATCCCCTCCTCTTTGCTCTCCTTTTTTTT
TCCCTCTCCTTTTGTCCTTTCATTTCCTTCTCCTCTCTTCTCCTCCTTCT
TTTCTCATCTTCCTCTTGCCTTCTTTCTCTTCCCTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_k20.b1 MSMg01no462_k20.b1 CHROMAT_FILE:
MSMg01no462_k20.b1 PHD_FILE: MSMg01no462_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:46 2005
         (496 letters)



>mm_chr13_24792471_24793368
          Length = 898

 Score =  880 bits (455), Expect = 0.0
 Identities = 485/497 (97%), Gaps = 6/497 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataaaattac---cagcgtccccactcattcttaaagtgcatgggaaaaa-tg 59
           |||||||||||||  ||   |||||||||||||||| |||||||||||||| ||||| ||
Sbjct: 204 ggaattcataaaa--acaagcagcgtccccactcatccttaaagtgcatggaaaaaaatg 261

                                                                       
Query: 60  tcaaacctaagaatagcactgtgacctttcacctaggtccaacaatggcaaccatttttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcaaacctaagaatagcactgtgacctttcacctaggtccaacaatggcaaccatttttc 321

                                                                       
Query: 120 atggcttgttttccctttgcctgcatacacacacatatcaaataaattggtaacgttaaa 179
           ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 322 atggcttgttttccctttgcctgcaaacacatacatatcaaataaattggtaacattaaa 381

                                                                       
Query: 180 gcattttcatcttaactgcctcccctcttgactggaggtgaaccatgccaaatgtatcat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcattttcatcttaactgcctcccctcttgactggaggtgaaccatgccaaatgtatcat 441

                                                                       
Query: 240 ctcctatctttctccacagtcaaatctgccagatgacatctttgagagtggaaaggctgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctcctatctttctccacagtcaaatctgccagatgacatctttgagagtggaaaggctgc 501

                                                                       
Query: 300 agaggagaaaaggccactgtccctcagcttcagtgacctgcaggatggagactgtgtctt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaggagaaaaggccactgtccctcagcttcagtgacctgcaggatggagactgtgtctt 561

                                                                       
Query: 360 cacctccagctcagccacctccccctccagttcacactcagcccatccagagattaccat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cacctccagctcagccacctccccctccagttcacactcagcccatccagagattaccat 621

                                                                       
Query: 420 cacccccgcagagcttacccacagcagcctgtcctcacaaaacgagggcaccgaggacag 479
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 622 cacccccgcagagcttacccacagcagcctgtcctcacaaaatgagggcaccgaggacag 681

                            
Query: 480 cagctcagcgtcttcca 496
           |||||||||||||||||
Sbjct: 682 cagctcagcgtcttcca 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space:   431568
Effective search space used:   431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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