BAC Information

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BAC

Clone NameMSMg01-463F09
Chromosome13 (Build37)
Map Location 43,164,343 - 43,340,971
singlet/doubletdoublet
Overlap genePhactr1, Tbc1d7, Gfod1
Upstream geneHivep1, Edn1, Hn1-ps4
Downstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463F09.T7 (MSMg01no463_f09.b1)MSMg01-463F09.TJ (MSMg01no463_f09.g1)
ACCAG548012AG548013
length787765
length of high quality
(start - end)
244 (81 - 324)422 (80 - 501)
definitionCHROMAT_FILE: MSMg01no463_f09.b1 PHD_FILE: MSMg01no463_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:42 2005CHROMAT_FILE: MSMg01no463_f09.g1 PHD_FILE: MSMg01no463_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,340,728 - 43,340,971)(43,164,343 - 43,164,764)
sequence
CCTTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACAAA
TCCGCGGAATTCAGGTCTTTTCCATAAATAGCCAGTGCTCTTAACTCTGA
GCTGTCTCTCCATCTCTTATTTACTTTTTTATCATCACATTTTAAACTCT
TCCTGGCTCTCTCTGATCTTCTCACTTGCCCTCTCCCATTTGTCAAATGT
TTGCCAAGGTGTTGGGATTTTTCTGAAAGCCACACCCTTCTGCAGACATG
TCCTCTCTCTTCGGAGGTGTGAGACAAACTCGAGTTGTGGCTTCTTCAAT
GAGTGTGTGACCTTGGAAGTTTGGCTTATAGAGGCAACTGCAAAGATTGG
GATAGCACAGTCCTCTGTCACCTGTGTTGCGCCCAGTGGGTTGTCAGGAC
ACAACATCATGGTGTCGCCAACTGCTTCGTGGCTTACAGAAAGATGCCTT
ACCTTGCTTTTGCTTTTCACAGCTGTGAAATAAACAGTGCTTTACAGGCA
AAAATGGAAGGTCAGAGAGGTGAAGGGGCATGTCTCAAGATGCAGATAAC
GGAACGAGCTTGTCTGCAACCACTAAGACAATGCTCTCTTCCCAATGTAA
ACAGCCAGCCTTTTTCCAAAGCAAAAAAAACCCTGAAAAGAAACTTGAAT
CATTTTGGCAAAATGGTTTGAATTCCCCCCGGTTTTTTCGCCCAATTCCT
CCATTTCCCGCCAAAAAACTTTCGTTTTCCTAAATTCACAAGAACAGGCT
CCCTTCCCAAGGAATTTTAGACCCCTTTGGTTTTTTG
TCCCCCCTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTCCTGCCAGAGTGACAC
GCCTGAGCGGCACAGCGGGTGAGTGGCCCTCATCCACTACCCCCAATAGT
TGTTCTCCATGAGACACAGTCCTCCTTGTCACCCTCTCAACTGGGGAAAG
TAAATTTGAGAATGAAAGTGTTCACTCATAGAAGGGGGAGGGAGGTCAAA
CCAAATTCATCTGGTGCCTTTGGTGTCATCTAGGATGGTCTATGATTTCA
GGATTCCGGAATGCCTGATGCATGTTTTAGTTACCATACCCTGGCCTGAC
ATGGGGCATTGCTCCACCCCCTAGCTTCCTTCTGCATCACTGGCCCTAAA
AAGAGGTCTGTCAGAGCATCTTCCTTTTGACCAAAGCAAAACTTCAAGCT
ATCATGAAGCCCCTGGGGCAGGCTTGTGTGCTGAAGGAATTGATGATATT
CTTGTTAACTCCCTCCTTCAGGCAAGGGTACTCTGAGGCAGCACTATAAT
TTAAGCCCTATGTATGTGTCATCTGGGACTCATATCTTGGGGCATCTAAT
GTGCTAAAACCACGCGTATAATGTATGTAAAATCCTTTCCAATACCTTTT
GTGCAATATGGGACCTATATCTACTTATTCTTGATGATCTCCTGTTCATC
TTGTTTATAATTTTTAAACATAAGGCTTCCTGGATAATAAATGCCTTTGG
ATATATATTTATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_f09.b1 MSMg01no463_f09.b1 CHROMAT_FILE:
MSMg01no463_f09.b1 PHD_FILE: MSMg01no463_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:42 2005
         (244 letters)



>mm_chr13_43340528_43341171
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccagtgctcttaactctgagctgtctctccatctcttatttacttttttatcatcacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gccagtgctcttaactctgagctgtctctccatctcttatttacttttttatcatcacat 385

                                                                       
Query: 61  tttaaactcttcctggctctctctgatcttctcacttgccctctcccatttgtcaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttaaactcttcctggctctctctgatcttctcacttgccctctcccatttgtcaaatgt 325

                                                                       
Query: 121 ttgccaaggtgttgggatttttctgaaagccacacccttctgcagacatgtcctctctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgccaaggtgttgggatttttctgaaagccacacccttctgcagacatgtcctctctct 265

                                                                       
Query: 181 tcggaggtgtgagacaaactcgagttgtggcttcttcaatgagtgtgtgaccttggaagt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 tcggaggtgtgagacaaactcaagttgtggcttcttcaatgagtgtgtggccttggaagt 205

               
Query: 241 ttgg 244
           ||||
Sbjct: 204 ttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no463_f09.g1 MSMg01no463_f09.g1 CHROMAT_FILE:
MSMg01no463_f09.g1 PHD_FILE: MSMg01no463_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:42 2005
         (422 letters)



>mm_chr13_43164143_43164964
          Length = 822

 Score =  777 bits (402), Expect = 0.0
 Identities = 417/422 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtcctgccagagtgacacgcctgagcggcacagcgggtgagtggccctcatccacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtcctgccagagtgacacgcctgagcggcacagcgggtgagtggccctcatccacta 260

                                                                       
Query: 61  cccccaatagttgttctccatgagacacagtcctccttgtcaccctctcaactggggaaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccccaatagttgttctccacgagacacagtcctccttgtcaccctctcaactggggaaa 320

                                                                       
Query: 121 gtaaatttgagaatgaaagtgttcactcatagaagggggagggaggtcaaaccaaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaatttgagaatgaaagtgttcactcatagaagggggagggaggtcaaaccaaattca 380

                                                                       
Query: 181 tctggtgcctttggtgtcatctaggatggtctatgatttcaggattccggaatgcctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggtgcctttggtgtcatctaggatggtctatgatttcaggattccggaatgcctgat 440

                                                                       
Query: 241 gcatgttttagttaccataccctggcctgacatggggcattgctccaccccctagcttcc 300
           |||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gcatgccatagttaccataccctggcctgacatggggcattgccccaccccctagcttcc 500

                                                                       
Query: 301 ttctgcatcactggccctaaaaagaggtctgtcagagcatcttccttttgaccaaagcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgcatcactggccctaaaaagaggtctgtcagagcatcttccttttgaccaaagcaa 560

                                                                       
Query: 361 aacttcaagctatcatgaagcccctggggcaggcttgtgtgctgaaggaattgatgatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacttcaagctatcatgaagcccctggggcaggcttgtgtgctgaaggaattgatgatat 620

             
Query: 421 tc 422
           ||
Sbjct: 621 tc 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)