BAC Information

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BAC

Clone NameMSMg01-463L05
Chromosome13 (Build37)
Map Location 23,710,192 - 23,710,433
singlet/doubletsinglet
Overlap geneHist1h2be
Upstream geneV1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d
Downstream geneHist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463L05.T7 (MSMg01no463_l05.b1)MSMg01-463L05.TJ (MSMg01no463_l05.g1)
ACCAG548290AG548291
length792871
length of high quality
(start - end)
242 (86 - 327)97 (160 - 256)
definitionCHROMAT_FILE: MSMg01no463_l05.b1 PHD_FILE: MSMg01no463_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:13 2005CHROMAT_FILE: MSMg01no463_l05.g1 PHD_FILE: MSMg01no463_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTCCACC
GGCGGNATTCATGNAAAAATTTCCAAAAACAGGAGTTTATCTAATTAATT
AAGACATAGTTTAATTAAATAACTCATCATGAACTAAAAATACCTGTCTT
ATAAATGCAAGCAAGAACCAACATTAGGAACTCCAACTCTATTTCTTTAA
AGAGGTCAAGAAAGAGTAGCATGTAATTTCATGTGATACCAAAACAGAAA
GGATAAAATTCATAACTAATTACTAACTGAGAATTAAATGGTGGAAGGAA
ATTGCAACTCAGTAAACGCTAAACACATTTTTTTTCAAATATTTTGACTT
AAAAACTCCCAAATCATTATTATGGAAAGGACAATGATGTTAGCTTTTTT
TTTTCTTTCCTTCATATTCTCTCCCTCCCTCTCTTTGTCTTCACTATGTG
GTCTTTATAGGCTTGATTTGTAGACCAGTCTGCCAAACTCATAGAGATCT
GCCTGCTTCTAACTCCTGAGGGTCTGTTATTAATGGCCCGTTCTACCAAA
TTTATGGTTTTCTTTCCTTCCATGTCAACTATTATCCCCATTGTTTGCGT
ATGTTTTTATTAATATGTCTACAGTTATACAAGGTCCTACGTCCGCTAGA
ACCTACTTAATTTCTTCACCTTTATTCTCCATCTCCCTTACAGTATCGAA
CATCTGCTTTTCAGCGCTCTCTCACTCTTTTTCCTTTTTTATCATTTTCT
ATTCTCCCCTTTTCCGAAATTTTACTTCTACTTTATCTTTTG
NNNNNNNNNNAAGAAGCTAAGAGGATGAGAGGGNNNNNNNAGTATGTTGN
NNTAGNNNNNNNCCGGGNNNNNNCCCAAGATAGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAATACTG
AATGTCTAATGACTATGTGAACCCATACCAGGCTCCTGGCTCATCCTCGA
GTCTGATTTGAGAAACCTGCCACCATCAATTAAGCTACCCCTCTTGCTTA
ATGACATAAGTGCCTTGCCCCATGAGTGTCCCGAGATGGAAAGAATGAAA
AAAAAATCCCGGGNNACCTTGGAAAAGACTGGCCAATAATATTGGGAAAA
AATTTTTTTTGGGGGCCCCAAAAACCCCCGGGTATTCCTCTTCCGCCCTC
CTCTGTAAAAAACAAAAAAAAAACCAAAAACAAAAATAGAGATGTTTTTT
TTTTGGGAGCGGGGGGGGAGGGGCGAAAAAACACACACACTTTTTTTTTT
TTTTTTGCAAAAAAGAAAAAAAAAAAAACTTTCCTCCTCTCCCCCACTCA
TATTTTGATTGGTGGGTTTTTTTTTTTTTTTTGCGCCGCTGTGCTGCCAT
TTTCTTATTTTACCAAAATGTCTCCCCCTTTGCTTATCTCACACTTTTTA
AATCATTGACCAAAGAGGGAAGTAAGAAGCCGCACTCTTTTTACCCTCTT
CTTTCTTCTACTTTTTTCTTTCGTTGCGCTATAGCCATATCTCAACACAA
TATTCACTAATTAACCAACTTCGCTTTTTTCCCTCTCCCCTATCCCTCTA
GCCCAATTTTACCATCTATATTTACGAAATCCTTTCTACTATGTATTTTT
CTTTTATCATCGTTCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_l05.b1 MSMg01no463_l05.b1 CHROMAT_FILE:
MSMg01no463_l05.b1 PHD_FILE: MSMg01no463_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:13 2005
         (242 letters)



>mm_chr13_23709992_23710633
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatctaattaattaagacatagtttaattaaataactcatcatgaactaaaaatacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatctaattaattaagacatagtttaattaaataactcatcatgaactaaaaatacct 260

                                                                       
Query: 61  gtcttataaatgcaagcaagaaccaacattaggaactccaactctatttctttaaagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttataaatgcaagcaagaaccaacattaggaactccaactctatttctttaaagagg 320

                                                                       
Query: 121 tcaagaaagagtagcatgtaatttcatgtgataccaaaacagaaaggataaaattcataa 180
           ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 321 tcaagaaagagtagcatgtaatttcatgtgatatcaacacataaaggataaaattcataa 380

                                                                       
Query: 181 ctaattactaactgagaattaaatggtggaaggaaattgcaactcagtaaacgctaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaattactaactgagaattaaatggtggaaggaaattgcaactcagtaaacgctaaaca 440

             
Query: 241 ca 242
           ||
Sbjct: 441 ca 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)