BAC Information

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BAC

Clone NameMSMg01-463M14
Chromosome13 (Build37)
Map Location 118,810,413 - 119,024,394
singlet/doubletdoublet
Overlap geneLOC674926
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1, LOC100041695
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463M14.T7 (MSMg01no463_m14.b1)MSMg01-463M14.TJ (MSMg01no463_m14.g1)
ACCAG548356AG548357
length825739
length of high quality
(start - end)
243 (82 - 324)247 (328 - 574)
definitionCHROMAT_FILE: MSMg01no463_m14.b1 PHD_FILE: MSMg01no463_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:20 2005CHROMAT_FILE: MSMg01no463_m14.g1 PHD_FILE: MSMg01no463_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,024,153 - 119,024,394)(118,810,413 - 118,810,659)
sequence
TGCCCGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGAACAGC
GCGGAATTCCTCACTTTGACAAGAGAAGGTCAGAGAGATCCTTTCTCAAA
AACAAAAGGCAGTGACCATGCCTGAGCAATCACAGCCTAGTGCATTCCAG
GTTGTCTTCATACAAGTTTGAGTCACATATACCATATGTGGAGAAAGAGA
CAGAGAGACAGAGAGAAAAAGAGAGGCAGAGAGAGACAGAGGACAGAAAG
AGAGACTGAGAGAGGCAGAGACAGGGAGAGAAGAAGGATGAGGATGAAGA
GGAGGGGGAAATGAGGGGTGGTGTCCTCCTTTTCCCCCCCCCCNCCCCCC
CGCCGCCCCCCCCCTTTTTTTTCTTCTCCTCCCCTTCTTTCTTTTTTTCT
TTTTTTCCTTCTTTTTTTTTCCTTTTTCTCCCCCCTTTTTTTTTTATCTT
ACCCTCCTTCCCTTTTCTCTTTATTTTTCTTTTTTTTTCTAATCTTTATT
TTATATCTACGCCATTTTTTTAATCTTCTTCTCTTATTCTTTTTCGTCTC
TCTCGTACTCTTTTTTTTTTTTTTTACTTACTCTCTCTACTCTCTCCTTT
ATCCATTTTTTTCCATTTCTTTCTTTTTTACTTCTTCTTTTTTCTCCTCC
TTTCTTTTTTTATCCTCGCCTGCTTTCTTTTCTCTCATTTTTCATTCTTT
GTCACTTCCTACTACCATCTTATTTCTTTTCTTTATTTACCCGCTTCTCT
TACTTATTTTTTATTTACTCACCTCTTCTCACGTTTATCACTCTCCTCTT
TGTTCTCCTACCTTTTTATCTTCAT
NNNCCCGATGATAGTGGGTAGCCTGGNGGNCGCCTGGTTTCAGAATTTAG
GTGAACTATAGAATGTTCCCGAAATTCCTTGTATTGTCTAAACAATCTCT
AGTTACCACAGGGCTGGCCTCAGACCTCAGTGATGGAGTACTTAGCTACT
ACAGTGTGAAGGTGAGACTGGAGGATCATAAGCTAGATGACAGTCTAGGT
TGTGACAAGACCCTTTGTGAAGGCCGTGACATTGAGTTGCCATTTCAAAG
GTGACTAAAAGACAAGAGGTTATTAAAAATGGTTCTCACTATGACTAGTA
GGAACTAAATATGTTGCCACTTTGTTTCCTACTTGCATTCTGTTTATTAT
TTTTCTCTAAGCTATAAACATATCCCACCACAAGATTCAGGTGCTAAGAC
AAAAAATATAACTAGTCTAGCAGAGATGAAGATATTCTAAAGAGACACAT
ATACCTTTTTGATATGTTTTGTAAAATGTAGTATGATGCAGTGGGATTAG
GACTGGTACCTTAATGGGCCCGTGCTGAGTCATCCTCTTCCCCCCAGGTA
TAAGTCACACAAAGAGTCTAGTATAAAATGAAGTTTATTTGGGGGCATGG
GCAGGATGGTTGAGAAGGGAGTAGAGGCAGAGAAAGATAAGGTACAGACG
TGGTCTTTATATTATTGAGATTGATAGAGATTAGTAATACATGTTGGACC
TGACCTTTTGGATATATAAATAGCTATCAGTTACTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_m14.b1 MSMg01no463_m14.b1 CHROMAT_FILE:
MSMg01no463_m14.b1 PHD_FILE: MSMg01no463_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:20 2005
         (243 letters)



>mm_chr13_119024086_119024728
          Length = 643

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagatcctttctcaaaaacaaaaggcagtgaccatgcctgagcaatcacagcctagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agagagatcctttctcaaaaacaaaaggcagtgaccatgcctgagcaatcacagcctagt 250

                                                                       
Query: 61  gcattccaggttgtcttcatacaagtttgagtcacatataccatatgtggagaaagagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcattccaggttgtcttcatacaagtttgagtcacatataccatatgtggagaaagagac 190

                                                                       
Query: 121 agagagacagagagaaaaagagaggcagagagagacagaggacagaaagagagactgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 189 agagagacagagagaaaaagagaggcagagagagacagaggacagaaagagagacagaga 130

                                                                       
Query: 181 gaggcagagacagggagagaagaaggatgaggatgaagaggagggggaaatgaggggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gaggcagagacagggagagaagaaggatgaggatgaagaggagggggaaatgaggggtgg 70

             
Query: 241 tg 242
           ||
Sbjct: 69  tg 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no463_m14.g1 MSMg01no463_m14.g1 CHROMAT_FILE:
MSMg01no463_m14.g1 PHD_FILE: MSMg01no463_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:20 2005
         (247 letters)



>mm_chr13_118810213_118810859
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctacttgcattctgtttattatttttctctaagctataaacatatcccaccacaagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctacttgcattctgtttattatttttctctaagctataaacatatcccaccacaagatt 260

                                                                       
Query: 61  caggtgctaagacaaaaaatataactagtctagcagagatgaagatattctaaagagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtgctaagacaaaaaatataactagtctagcagagatgaagatattctaaagagaca 320

                                                                       
Query: 121 catatacctttttgatatgttttgtaaaatgtagtatgatgcagtgggattaggactggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatacctttttgatatgttttgtaaaatgtagtatgatgcagtgggattaggactggt 380

                                                                       
Query: 181 accttaatgggcccgtgctgagtcatcctcttccccccaggtataagtcacacaaagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accttaatgggcccgtgctgagtcatcctcttccccccaggtataagtcacacaaagagt 440

                  
Query: 241 ctagtat 247
           |||||||
Sbjct: 441 ctagtat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)