BAC Information

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BAC

Clone NameMSMg01-464K02
Chromosome13 (Build37)
Map Location 21,142,074 - 21,142,338
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464K02.T7 (MSMg01no464_k02.b1)MSMg01-464K02.TJ (MSMg01no464_k02.g1)
ACCAG548999AG549000
length787822
length of high quality
(start - end)
266 (47 - 312)278 (80 - 357)
definitionCHROMAT_FILE: MSMg01no464_k02.b1 PHD_FILE: MSMg01no464_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:28 2005CHROMAT_FILE: MSMg01no464_k02.g1 PHD_FILE: MSMg01no464_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTACGTGTCTCTGACTCACAGTTTTATCCTCCACCTGAGGGGTTT
AGCCAAGTCTGCCTCAGTATAATTCTGAGAGTCTTACTCTGTATCAGAGG
GAGACCTATGAAGTGAGTTTTCTTTTTTCTTTGCCTCTGGAGCCATCTAG
AGGCAGACTCAACAAGACTTTCCCCCCTTCTTCCATTTGTCCACTCTCTA
CCTCTCTTTCTGTCTTTGTTTCTTTCTCCCTCAGTGGCTTCTGCTACCCT
TGACAAGGCACCATATTATTTCTCCAGCATCCTCCTCTCTCTGCCAGTGA
AGGCGCTCATTTCAGCTTTTGTTTTCCACCCCTTTCTATTTCCCATATAT
TTCCCCATCATCACTGTCCATATCCCTTATCTTGATGGTCTCATATACTT
TTGATAATCTCCCGGGTTGTTGTTGGGCCTTTTTTGTTTGTTAGCTCCCT
CCGGCTCCTTTTCTCTCGTTTTCCCTTCTCTCTCCTTCTTCTCCCCCTCC
CTCCTTTTCTCCTTCTTTTCTTCTTTCTCTCTTTTTTTTTTTCTCCCGCC
GTTTTCCTTTCCCTGTCGTTTTTTTTTTTTTTCTTTTTCCTCCTTTTTCC
TCTTCCCCTCTTCACCCTTTCCTTTTCCTCCCTCTTTTTCTTTTCCTTTC
TTCCTTCCCCCCTTTTCTATTCTCTTTCTTTCTATCCCTTTCTCCCCTTT
TCTATTCTTCTTTTTTCCCCCTTTGTATTTGCTCTCC
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACATCCAGGGCTACACA
GAGAAACCCTGTCTCAAAAAAACAGGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGGAAC
TGCCCTTCTGAATTGCTTTTGTTTTCCCCATGTGTTTCTTTGTGAGGCAC
CAAAAGAATTATTTTCCAGAATTTCAGAGGGAAGGGAAGCAAGGGAAGGA
GGGAAAAAAGGAGGGAAGGAAGGAAGATTTTAGAGGAAGAAAGAAGGGAG
GGAGGGAAGCCCCGCCCCCTCCTCCCCCGCCCCCTTACCGGATATTTTGG
TTTCGTTTTTAACCCCTTTTTCTTTTTCCCACATTATTTCTCTATTTCCT
ATTCATCAGCCTCTCTATCTATCTTCTGACCCTTATTACATGTTATTCCC
GAACATCACTCTTATCCTTACCGCTTCGTCTCGTTCTTTGTTGCGTGTTC
CATTATTCTGATTCCTTACTTTCATTTATGTTTTATCCTTTCACAGCTGG
CCGCGTAGCCGGGTGCCCTTGACTATATCTATCTCATTTCATCTCTCCTT
CCTATATTTACTGAGCATGATATCCACGTATGATCTTTCTTCTCCTGACG
TCTTTTTCGTTTATTCCAATAATTTTTCTCTACCGTTAAATCCACATCTC
CTTTTCCTTTCTTCCTTTTATTTTCCTCGCTTCGTCCGCACTTTTTCCTC
CTTTGTTATTTCTGCTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_k02.b1 MSMg01no464_k02.b1 CHROMAT_FILE:
MSMg01no464_k02.b1 PHD_FILE: MSMg01no464_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:28 2005
         (266 letters)



>mm_chr13_21141877_21142542
          Length = 666

 Score =  451 bits (233), Expect = e-131
 Identities = 254/265 (95%), Gaps = 7/265 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacgtgtctctgactcacagttttatcctccacctgaggggtttagccaagtct 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattctacgtggcactgactcacagttttatcctccacctgaggggtttagccaagtct 257

                                                                       
Query: 65  gcctcagtataattctgagagtcttactctgta-------tcagagggagacctatgaag 117
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 258 gcctcagtataattctgagagtcttactctgtactctgtatcagagggagacctatgaag 317

                                                                       
Query: 118 tgagttttcttttttctttgcctctggagccatctagaggcagactcaacaagactttcc 177
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 318 tgagttttcttttttctttgcctctggagccacctagaggcagactcaacaagactttct 377

                                                                       
Query: 178 ccccttcttccatttgtccactctctacctctctttctgtctttgtttctttctccctca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccccttcttccatttgtccactctctacctctctttctgtctttgtttctttctccctca 437

                                    
Query: 238 gtggcttctgctacccttgacaagg 262
           |||||||||||||||||||||||||
Sbjct: 438 gtggcttctgctacccttgacaagg 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)