BAC Information

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BAC

Clone NameMSMg01-465I21
Chromosome13 (Build37)
Map Location 112,187,077 - 112,187,333
singlet/doubletsinglet
Overlap genenone
Upstream genePlk2, LOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953
Downstream geneGpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465I21.T7 (MSMg01no465_i21.b1)MSMg01-465I21.TJ (MSMg01no465_i21.g1)
ACCAG549707AG549708
length792533
length of high quality
(start - end)
249 (64 - 312)---
definitionCHROMAT_FILE: MSMg01no465_i21.b1 PHD_FILE: MSMg01no465_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:42 2005CHROMAT_FILE: MSMg01no465_i21.g1 PHD_FILE: MSMg01no465_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
ATTTTGCTACTGTGGCACAGTCAAGCAGGTTCCGGTTCAGCTGTAGCTTC
CGGTTATTTCCGTCTACGTTTTGCTCTGTCAACTCCTTAAAAGTTACATT
AGTCCTCCATTGCAGCAGTTCAGCACCTAGACTATTAATGTCAAAAGTTC
AGACCTAGGCTCCAGCACTCACAGGTTGGGTGTGCTCAGGGGGGCCTTTG
TGCACCATGTTCCTTGCTAAAATGAGGGAATACTTGTACCTGCTTCAAGC
GGCTGTGTGGATTTCTTATATTTAAATATTTGATTTTTAAAAGGTTTATT
TATTTATATGAGTACATGCTAGCTGTCATCAGACACACCAGAAGAGTGCA
TTGGACCCCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATT
GAACTCTGGAACCCTGGAAGGAGCAGTCAGTGCTCTTAACCACTGAGTCA
TCTCACCAGTTTACCCGGTTTTTTACTGCCCTTTTTATCCCCTCAAGGAC
TTTGTGCGCATTTTTTATTTGTTTGTGCGGCCTCTTTATTTTCCCAATTA
TTTTAGCTGTCTCACATTGTGAATCTCCCTTTTTTTTTTTTTGTATTCAC
GCCGTTTTCCCTTCCCCTTCCCCGCTCCTTTTCTCTTCTATCCTTATTTT
TCCTCCATATTTCCCGCGCTCCACCTTTTCTTCCCACTCTCTCTTTTCCC
TCGCTCCTCTCTTTTCCATTCTCCCTTTTTCCTCTCGCCTCN
TTCGTCCGTCCTTGTTGCTCCTTTTTGTTTTCGGGGGGTTGTTATTCTGT
GTGGACATATTTTATTCCCCGCCCCTGTTNNTTNTCGGGAAGCATAGAGG
GGGTTTGGGCCTGGGGGGGGCCGGCCGGGGTTCTCTCCGAAATGGGGGGN
NGGAAACAACTATAGNAAAGGTTTCCGCGGAAAATTCTTTATGTATCAAC
AAGCAGGGNAAAAACCTGGTTAAAACTGAGCAAGACCTTAAGGGGGAACA
CTTTCCACTTAAAGGAAGATATGGCAGATATGGAGGCCAGGAACCAAAAA
GGGAGGTTGCCCTTTAATTTGGGGCCATTCAGGGGACCCCCGGGAAGGGT
TAAAAACAATGGGGGAACCCCCTTTAAAAAAGGGCCTAATCCCAAGGGGC
CCCCCAAAATTCCCGGGTATTTGGGACCTCCAAAGGGGGGGGAAAAAGGA
AATTTTGGGGGGGGCCCCTATGGGGGGGAAAAACCCCCCCCTTTTTTTTT
TTTTTTCTCCGGGGGGGGAAAAAAGAAAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_i21.b1 MSMg01no465_i21.b1 CHROMAT_FILE:
MSMg01no465_i21.b1 PHD_FILE: MSMg01no465_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:42 2005
         (249 letters)



>mm_chr13_112186952_112187600
          Length = 649

 Score =  462 bits (239), Expect = e-135
 Identities = 249/257 (96%), Gaps = 8/257 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcacagtcaagcaggttccggttcagctgtagcttccggttatttccgtctacgttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggcacagtcaagcaggttccggttcagctgtagcttccggttatttccgtctacgttttg 323

                                                                       
Query: 61  ctctgtcaactccttaaaagttacattagtcctccattgcagcagttcagcacctagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctctgtcaactccttaaaagttacattagtcctccattgcagcagttcagcacctagact 263

                                                                       
Query: 121 attaatgtcaaaagttcagacctaggctccagcactcacaggttgggtgtgctcagggg- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 262 attaatgtcaaaagttcagacctaggctccagcactcacaggttgggtgtgctcaggggg 203

                                                                       
Query: 180 -------ggcctttgtgcaccatgttccttgctaaaatgagggaatacttgtacctgctt 232
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gctgcttggcctttgtgcaccatgttccttgctaaaatgagggaatacttgtacctgctt 143

                            
Query: 233 caagcggctgtgtggat 249
           |||||||||||||||||
Sbjct: 142 caagcggctgtgtggat 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)