BAC Information

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BAC

Clone NameMSMg01-466F08
Chromosome13 (Build37)
Map Location 24,398,818 - 24,399,309
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466F08.T7 (MSMg01no466_f08.b1)MSMg01-466F08.TJ (MSMg01no466_f08.g1)
ACCAG550304AG550305
length771758
length of high quality
(start - end)
245 (67 - 311)492 (78 - 569)
definitionCHROMAT_FILE: MSMg01no466_f08.b1 PHD_FILE: MSMg01no466_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:47 2005CHROMAT_FILE: MSMg01no466_f08.g1 PHD_FILE: MSMg01no466_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCGCGGA
ATTCACGCATTTGCATCCTTCTTAACAGTCTGCTTTACGGGAACCTTTCC
TACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCA
GTCCCGAGTTTTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAG
ACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTG
CGGCAAAGCTTTATTTCTTACATCTTCAGGAGCCAGGGTGCAGGAAGCAA
GAGAGCAAGAAGTTTTTTTGTCGAAAAGGGAGAATGGCGGGAACCCCGTC
CCCTTTAAGGAGGAGTTATCCTTCACTTAGGACGTGTCACTCCCTGATTG
GCTGCAGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGT
AGTCATAAGATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAG
AACACAGGATGTCAGCGCCATCTTGTAACGGCGAATGTTGGGGCGGCTCC
CACATCCAATGGGCCCAGAGTACCCAGACACGTGCACACACACACCCACC
CTTACTTTTTAAAATAAAATAAACTTTTAACAAGCTTTGCTTTTTTTTTG
GAGAGGCCCGGTATAATAGGAAAGCGGTCAATTCCGGGGCCTGGGACATT
TTCAGGATTATTTTTTCCCTCCCGGTGAATAATTTGCGAACTATATACAA
ATGCTTCTTTGTTCCCCCCCG
CCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGAGAATTCCCATACAGATG
TTCTCTTGCTTACTGCATACCTTTTAACAGGGAGTTTGAAAAGGGCCCAG
TACTCACTGTACAATTCAAAAAAACCAACTGCCTTTTTGGAAATAAGGAT
GATGAGCACAGTTTATAAACCCACTCTCTAAACAGGTCAAACTGTGTGCT
TACGAGGATATCTCCAATAAAGTGGTGGATGAGGCCAAAGATTTGTCTTT
CTTTATATGCTCTGCCCCACAGAGCCTTTCAGAATATGACACTCATGGGA
AGGACAGATACAAAGACTGTAAATAGGAGAAATGCATTTCAAGAAAAACC
TTAGATAGAGGCAAGTCGATTGGAAATGGCCTTGGTTTTATGGAAATAGT
TTCTCCAGTGCTGGAGTGAGGGGCTGGGTGTGAAGTGTGGGGCTCGGGTC
AGAGAGGCAGGCTAATGTGTCAGCATGCAGGATAAAATAGAGGACACACG
TAAAAAGCCCTCCTTTTCTCCTGAGGAGAGAAAGCTAGCATGAAACTTCC
ATTCTGGGATGGCCGAGGAGAATGATCATTAAATTTCCGGGAGGACAAGC
CTTTATGGGAAGAGACCCGGCTCTAAAAAAATACGAAGGGCAGTATTTAA
AAATAGGGCCCTCATTCCGGATCTGTATGAACGTTTGTTCCTCATACCAT
TTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_f08.g1 MSMg01no466_f08.g1 CHROMAT_FILE:
MSMg01no466_f08.g1 PHD_FILE: MSMg01no466_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:47 2005
         (492 letters)



>mm_chr13_24398618_24399509
          Length = 892

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgagaattcccatacagatgttctcttgcttactgcataccttttaacagggagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgagaattcccatacagatgttctcttgcttactgcataccttttaacagggagttt 260

                                                                       
Query: 61  gaaaagggcccagtactcactgtacaattcaaaaaaaccaactgcctttttggaaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaagggcccagtactcactgtacaattcaaaaaaaccaactgcctttttggaaataag 320

                                                                       
Query: 121 gatgatgagcacagtttataaacccactctctaaacaggtcaaactgtgtgcttacgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgatgagcacagtttataaacccactctctaaacaggtcaaactgtgtgcttacgagg 380

                                                                       
Query: 181 atatctccaataaagtggtggatgaggccaaagatttgtctttctttatatgctctgccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatctccaataaagtggtggatgaggccaaagatttgtctttctttatatgctctgccc 440

                                                                       
Query: 241 cacagagcctttcagaatatgacactcatgggaaggacagatacaaagactgtaaatagg 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 cacagagcctttcagaatatgacactcatgggaaagacagatacaaagactgtaaatagg 500

                                                                       
Query: 301 agaaatgcatttcaagaaaaaccttagatagaggcaagtcgattggaaatggccttggtt 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 agaaatgcatttcaagaaaaaccttagatagaggcaagtcaattggaaatggccttggtt 560

                                                                       
Query: 361 ttatggaaatagtttctccagtgctggagtgaggggctgggtgtgaagtgtggggctcgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatggaaatagtttctccagtgctggagtgaggggctgggtgtgaagtgtggggctcgg 620

                                                                       
Query: 421 gtcagagaggcaggctaatgtgtcagcatgcaggataaaatagaggacacacgtaaaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcagagaggcaggctaatgtgtcagcatgcaggataaaatagaggacacacgtaaaaag 680

                       
Query: 481 ccctccttttct 492
           ||||||||||||
Sbjct: 681 ccctccttttct 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)