BAC Information

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BAC

Clone NameMSMg01-466M04
Chromosome13 (Build37)
Map Location 11,307,099 - 11,307,338
singlet/doubletsinglet
Overlap genenone
Upstream geneChrm3
Downstream geneLOC100039648, Zp4, Ryr2, LOC100039678, Mtr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M04.T7 (MSMg01no466_m04.b1)MSMg01-466M04.TJ (MSMg01no466_m04.g1)
ACCAG550631AG550632
length1,264789
length of high quality
(start - end)		---240 (77 - 316)
definitionCHROMAT_FILE: MSMg01no466_m04.b1 PHD_FILE: MSMg01no466_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:22 2005CHROMAT_FILE: MSMg01no466_m04.g1 PHD_FILE: MSMg01no466_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTCCTCTTTTCTCCACCACNACCCCGCCCGCTACCCACATCCTTCTC
ATCACCCACCCCTACGCCAACCCCTCCCTATATTATTATCTCTCATTCTC
ACACACCACACATACCCAACCTCACTCTCACCACTTCTCCACTCTCTCTC
CCTATCTTCCTCTTCCTCATCTTCTCTACTTATTGTCCATACNTATTATT
ATTCTCAATTTTATATAAATTTTTTTTACCTCTAATACACTCTAAATAAT
TATTCATATAGTATATTCCCTATTCCGTATATTAGATTAATTCATAACTT
GACAAGCAACACATACACCTCGTACAACTTCCTATAAATTATTTATCCCA
TTATTCTCACTCCACTCTCTTATATATCATTATTTCGTTTTCTCACACTC
CCTACACGCACCCACCCAGTACTCTTTATCTCTTCTGCATGTCATTTATA
CTCACCTACCCGTTCACATTTCCCCTAACATCTTCATTCATTCATAACCT
CTCCCTCTTATATCTTCTTCTCATTCTCTGCCTACTCTCTTTNTATCCCT
TCTTTTTTCGTCCTATTCTCTCCCCTCCCCCCACACCTACACGCACACAC
CCTCTCACTTATCTCACCTACCATATCTCACACCACCACCACACACCCGA
CACACACAATACTACAAACACTAATAATTCACACCACACCATACCACTAC
ATCCCCTACCTCTCTCCTATTCATACCCCTCCTCTCACCCTCATTTCTTA
CACTCTACCTCTAACTAATAAACACTCTTACTCACCACACACATTCTCTA
ACTATTCCCTCATTACTCTCATCTCACACCTCCCCACACTTGTACCTTAA
TAATCACCTCGCATATTATACTCCACTCTATTCCCTACTCTCTCCATTGT
ATTTTCACTTTCTTCTCTCCTANTAATATTCACATCTTATACTCTCTCAT
CTTCTTCCTATCTCCTCCTCTTCCTCCACTCTCCCTACATTCACTCCTCA
CTCAAACTATTTACTCTATCATCANATGTCATCTTCCGCATCCCACTCCC
TCTTCTCCTCCTTCTCATCTATATAANTATTATTCTCATCACCTCACCTT
AACATACCCACCTATACTCTAATCTCTCTCTATTATCACATNATCTCTTT
TCACAGCACTCCCTCTCACACTCCCCATATTCACCTCTTCTTCTCTTCAT
CTCACTATTTATTTATACTATTAACATAACCATTCACCATATCATCTCAC
TATTCTCTCTCCTC

NACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTGATAAGCTAGAGTCGTAG
TCTGCATACTGAGCAGTGATGTAGATAAATCAGGCGTTAGCCATAGATAC
AGGACCACAAGTGTAGGAAGTATTCTTGGCTGGAGATCAAATGAGATATA
TGTACCTAAGAGTACCTAAAACTTCGATATTAGATATGCCATCCAGAAAG
ACAGTGTGGGCAGCAAATGGAAGCAGCTCAAACCCATGACAAAGCTGAAG
CACCTCAGAAGGAAGCTCTTTTTGAAGAGCAGGCTCAATAAAGGAATGTA
AGAAGGAACAAGTAGTAGTATCCAAAGAGGTAAAATATATGTATTTATAA
CCTAAAGACAGATATAAAATTACCATGTTTGTCATTATTTGAGATCATTA
GTGACTTGTAAGGGATTTCTGGGTAGTGGTAAAATCCTACTGAGAGCTGA
CCAAATGATGTGTGTGTGTGTGTGTGTGTGTGTGCCTACTATTTTCCCCC
CCTTTTCTTCCTTCTCCTTTTTCTTGCCAATTCTTCTCCCTTGTCTTCCT
TCTTTCCTTATTCCTTTATCCTCTGTTTTGTTTCCCCCTAAGCTCTCCCC
CTTTTGTATTTTCGCATTCACTTATTGACCCTTTATCTCTTCGCTTGATG
TCTCGACATTTGTTATTGTTTATTCGCTCTCTTACATTTTCTACTCTCAA
CTCCTTTTCTTCCTTTCCTCCCCCTTCGTCTCATACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m04.g1 MSMg01no466_m04.g1 CHROMAT_FILE:
MSMg01no466_m04.g1 PHD_FILE: MSMg01no466_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:22 2005
         (240 letters)



>mm_chr13_11306899_11307538
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctgataagctagagtcgtagtctgcatactgagcagtgatgtagataaatcaggcg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctgataagcttgagtcgtagtctgcatactgagcagtgatgtagataaatcaggcg 260

                                                                       
Query: 61  ttagccatagatacaggaccacaagtgtaggaagtattcttggctggagatcaaatgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagccatagatacaggaccacaagtgtaggaagtattcttggctggagatcaaatgaga 320

                                                                       
Query: 121 tatatgtacctaagagtacctaaaacttcgatattagatatgccatccagaaagacagtg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatttacctaagagtacctaaaacttcgatattagatatgccatccagaaagacagtg 380

                                                                       
Query: 181 tgggcagcaaatggaagcagctcaaacccatgacaaagctgaagcacctcagaaggaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggcagcaaatggaagcagctcaaacccatgacaaagctgaagcacctcagaaggaagc 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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