CTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTATGTTTCCTTAACGTGGAGTCATTAACATTAATAGAGAGGAC
ATTCCTTGGAGGAATATGAAAAATATTTACATTATTACACAAACAAGCCT
TATGCCCGCAGCAGCCATTGACAGTGGTGGAGGATCACAGTGGGCCCCTG
TCCCACAGCCAGGAACCGTGCCACTCTGTCCCCATTATGGCCAGGCTGGG
ATCCAAGATGTAGGGTAAGAAGTGTATAAGGATATTGTTGAATGCAGAGC
CAGAAATGAGAAGGTGATTTATATCTATGCATTTTTTAAGAACAATGAGC
TCTAAAATGGAGCAAGTATGCACCTAATGACCAGAAAGGTCTGGGGACTA
ATAGAACTGCATCATCATTTTGTGTGAACTAGCATGAATTCCCAGAAGAG
TAAAAATCCATACTCAATGGTAAACATAAATAATTTGCAATACTTAATTT
AAAAGATGTTTCCATTGTCATGAATAATATTTTATTTTATTTGTGCCACT
TGTTCCATTAATCCTCATACATTACCAAGATAACGCTTTTCATCAGTCGT
TGACCGAGAACCCCCTGTCCTACGTTAAATTATTTCCTTCTGCTGCTTTG
TTTTTTTAATTACTCTCCCCCAAATTCTCAAATGAATTAATTTTCCTCTT
CTTTCGGATCTCTCAACTTCAATTATCTCCTTCTTGTCCCTGCTATATCT
TTCATACTCTCTTCACACTACTTCTTTTCTTTCN

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATGTTCACCACAGTGCTATTCAT
TACAGTAAATACCTTCTATCTGATATAGTGTGAAGAAAATGAATATGCAG
AAAATACACAATAAAAGAATATTTAACCATACATACAGAAATTAAATTCT
TATCTTTGTCAAAATAAATGTAACAGAGATCATATATTTTAAAAAAAAAA
GCTAGAACAGAAAGACAAGCACGAATGTGTAATCCAAAAAAAATTGAGCT
CAAAGAACCCAATACCATAGTTAATGGAGTGATGAATAGTAGGTAATATG
AAGACTGATTAATTAAAAGGGTACTGAAATAGAATTGGGAACATGAAATT
TCATTGTATGTTTGAACTGTAGTCTAAATGTAGAATATATGATAGATAAA
ATGATTTTAAAAGTTTTACTATTTAGAAGGTATATAGTTTTGAGGAGATA
ATATAAGTATACATTAAACAAACTTGTTCCAAAATTTTAGATATTACCTA
TTAGAATCAAGTTTGTGTTTTTTCATCAGTTACACAGTATAAAAAATAAT
AGAATACACTGACTGCATTCATAAATCAATTTACACATTTAACTTAAGCA
AATTTGCTTTAAATACACGCTACACCCTCTCACCCTCTCCACCCCCACAC
TACACACACTCCACTCCCCCCAGTTTTTCCTGGAAGTCTCCATCAATTGC
CCCACCTGAAAATATCCAN

Query= MSMg01no466_o02.g1 MSMg01no466_o02.g1 CHROMAT_FILE:
MSMg01no466_o02.g1 PHD_FILE: MSMg01no466_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:33 2005
         (539 letters)



>mm_chr13_88398645_88399583
          Length = 939

 Score =  837 bits (433), Expect = 0.0
 Identities = 514/541 (95%), Gaps = 4/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgttcaccacagtgctattcattacagtaaatacctt-ctatctgatatagtgtgaa 59
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 201 tcatgttcaccacagtgctattcactacagtaaataccttgctatctgatatagtgtgaa 260

                                                                       
Query: 60  gaaaatgaatatgcagaaaatacacaataaaagaatatttaaccatacatacagaaatta 119
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaatgaatatgcagacaatacacaataaaagaatatttaaccatacatacagaaatta 320

                                                                       
Query: 120 aattcttatctttgtcaaaataaatgtaacagagatcatatattttaaaaaaaaaagcta 179
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aattcttatatatgtcaaaataaatgtaacagagatcatatattttaaaaaaataagcta 380

                                                                       
Query: 180 gaacagaaagacaagcacgaatgtgtaatccaaaaaaaattgagctcaaagaacccaata 239
           ||| |||||||||| ||| |||||||||| |||||||||||||||||||||||| | |||
Sbjct: 381 gaatagaaagacaaacacaaatgtgtaat-caaaaaaaattgagctcaaagaactcgata 439

                                                                       
Query: 240 ccatagttaatggagtgatgaatagtaggtaa-tatgaagactgattaattaaaagggta 298
           |||||| |||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 440 ccataggtaatggagagatgaatagtagg-aagtatgaagactgattaattaaaagggta 498

                                                                       
Query: 299 ctgaaatagaattgggaacatgaaatttcattgtatgtttgaactgtagtctaaatgtag 358
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 499 ctgaaataaaattgggaacatgaaatttcattgtatgtttgaactgtagtctaaatatag 558

                                                                       
Query: 359 aatatatgatagataaaatgattttaaaagttttactatttagaaggtatatagttttga 418
           |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct: 559 aatatatgatagataaaatgattttagaagttttactatttagaaggcatacagttttga 618

                                                                       
Query: 419 ggagataatataagtatacattaaacaaacttgttccaaaattttagatattacctatta 478
           ||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||
Sbjct: 619 ggagataatataagtatacattaaagaaacctgttccaaacttttagacattacctatta 678

                                                                       
Query: 479 gaatcaagtttgtgttttttcatcagttacacagtataaaaaataatagaatacactgac 538
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 679 gaatcaagtttgtgttttttcatcagttacacggtataaaaaataatagaaaacactgac 738

            
Query: 539 t 539
           |
Sbjct: 739 t 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)