BAC Information

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BAC

Clone NameMSMg01-467K12
Chromosome13 (Build37)
Map Location 23,595,622 - 23,595,939
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
Downstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K12.T7 (MSMg01no467_k12.b1)MSMg01-467K12.TJ (MSMg01no467_k12.g1)
ACCAG551312AG551313
length744726
length of high quality
(start - end)
---318 (318 - 635)
definitionCHROMAT_FILE: MSMg01no467_k12.b1 PHD_FILE: MSMg01no467_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:35 2005CHROMAT_FILE: MSMg01no467_k12.g1 PHD_FILE: MSMg01no467_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGTGGCGCTAAACGAANCCCAAATTCAACAAATGCGCGGAAANCNA
TAATCTGCCACTCGTGGGTCATTGTTGAGACCGGCCAGCGGATCACATGG
TCTGTTTTTGTTCTGAGAAAGCATCTTGGAATCTGGAAGAGAAAAGGGAG
CTAGGCTGTGAGAGAGAAAGATGAAACCTAGACAGTCAGTCTGATCAAGG
TTCAATTTTAATGTCAGCAAACACACTTTATAAAGAAGAGGGTAGGTCCA
TCTCTAGACAAGTAAAGTTCTTTTGAAGTAGACAGATCAACCTTTTAGTG
CGAACTATTTTATTTTAACAGCTTGGCGTTAACTCCGGAAAATCTTGCAA
TATAATAGGTTGGGCCCGCGGCAGGTTAGTGCCCCATTCTAGGAGCACCT
CATCACGTGGCTCCGCTTACTCCGCAGATGTTCACAGCCTGCCCTTGCTA
TGCTGGAAAGAGGTAACACGCCCTCATATTTAACATCTTGTAATACCGTA
CTACTGATAGCTATGCTTCACCAGTCTTCAGATCGTACCCTTATTATCAA
TTGCGCCAACATATCTTTTTTGTGTATTTTTGTCTCCTAATGTGTTGCCT
TTTTCCCTTTGTCCAACGCTTCTGTCCTTATCCCCTATCCTTTTCCCTTT
TTCTGACCCCCCAACTCCCCCCTGTTCTAATACATCGCTATTTCTTCCCA
ACTTCTAGTTCGTCCCCCTAATCGCATTTTTTTTCTTCTTTCTA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCGCGAAATTCCTGACCTGGAAACATCTGTGTACAGCAGTGGCA
CCCCCTTTAAAGCCCTACTGAAGCCCTTGCGCTTATATGGCCTTTTAGCC
TTGCTTCCGATTGACCTATTTAAAAACAATTATAATTGATGCATCAGGTT
CCTATATTCAAGAATTGCTGATTTTTTAAAATGTATTTCCCTAATAAATT
CGTGATAACATCATCACTACCATAAAGTACAAAGAGAAAATGTTATTTTC
CAATAATATTTTTTATCAGCAGCCCCTCCATGTGAGACCACGTGGCCTAA
TGGATAAGGCGTCTGACTTCGGATCAGAAGATTGAGGGTTCGAATCCCTT
CGTGGTTGAACTAGAGTTCTTTTACTTTTCTTCTCTTTGAACAATAGGTT
ATCTGACAATTGCTTCCTGATGTAAAGTTAGTACCGGGTAAACACAGAGA
AGATTGAAAAAAGTCTGTATCAGGGCAAAATAGCAAGGCAAAAACTCCGG
ATGACTTCTCCAAACTAAGAGACTGAAGTAACCATTACAGTCTAACAATA
TGAAGCAACTTGGACCAGATGTGCTTTATAAAAGCAGCTACCAATACTGT
AATCCCAATACTCTATACAGACAGAGACTGGAGCATCACCACCAGTTTAA
AGATCGCACTGGCTCCACAAGGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k12.g1 MSMg01no467_k12.g1 CHROMAT_FILE:
MSMg01no467_k12.g1 PHD_FILE: MSMg01no467_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:35 2005
         (318 letters)



>mm_chr13_23595329_23596046
          Length = 718

 Score =  561 bits (290), Expect = e-164
 Identities = 311/318 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagcccctccatgtgagaccacgtggcctaatggataaggcgtctgacttcggatcag 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agcagcccttccatgtgagaccacgtggcctaatggataaggcgtctgacttcggatcag 552

                                                                       
Query: 61  aagattgagggttcgaatcccttcgtggttgaactagagttcttttacttttcttctctt 120
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct: 551 aagattgagggttcgaatcccttcgtggttgagctagtgttcttttacttttcttatctt 492

                                                                       
Query: 121 tgaacaataggttatctgacaattgcttcctgatgtaaagttagtaccgggtaaacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgaacaataggttatctgacaattgcttcctgatgtaaagttagtaccgggtaaacacag 432

                                                                       
Query: 181 agaagattgaaaaaagtctgtatcagggcaaaatagcaaggcaaaaactccggatgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agaagattgaaaaaagtctgtatcagggcaaaatagcaaggcaaaaactccggatgactt 372

                                                                       
Query: 241 ctccaaactaagagactgaagtaaccattacagtctaacaatatgaagcaacttggacca 300
           ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 371 ctccaaactaagagactgaagtagccattacagtcaaacattatgaagcaacttggacca 312

                             
Query: 301 gatgtgctttataaaagc 318
           ||||||||||||||||||
Sbjct: 311 gatgtgctttataaaagc 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)