BAC Information

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BAC

Clone NameMSMg01-469K17
Chromosome13 (Build37)
Map Location 112,125,344 - 112,125,577
singlet/doubletsinglet
Overlap genenone
Upstream gene9830130M13Rik, Plk2, LOC100040614, LOC668159, 4732495G21Rik
Downstream geneLOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469K17.T7 (MSMg01no469_k17.b1)MSMg01-469K17.TJ (MSMg01no469_k17.g1)
ACCAG552850AG552851
length781790
length of high quality
(start - end)
240 (78 - 317)399 (69 - 467)
definitionCHROMAT_FILE: MSMg01no469_k17.b1 PHD_FILE: MSMg01no469_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:19 2005CHROMAT_FILE: MSMg01no469_k17.g1 PHD_FILE: MSMg01no469_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATACAGGATCCGCGGAAT
TCCACACTTTTCCTCACTACAAGAAAAAACAAACAAAATTTAAACAATAT
CCACAAACCCCAAACTAAAAACAAACAAACAAAACCCCCAAACCAAAAAC
CAAACCACTAAAGTGAGAGGCTGTTCACCATGTTGATGAATGTACATCCA
AAGGAAAATAGACCCAAAATGGACATGTTTCCCTAGAGAATTTTCTACTG
TTACAGTACTCAGAGAACTTGGCATTTCTGTGAATTGATAACCAGGAAGA
ACATCCCCTCTGTCATTTTTCTTCACAGAAAGTGCCTGGGTTAGGGCCAC
TATATAGGAACTATATAGTTCAGGAGGCAATTCCATTACAATCTCTTAAC
TTTTAATCATTATTAAGCCATTAGTCCATTTGCTTTTTAAAGAGGCAGTT
GGGGGGGTTTGCTTTCTGCTTGCCTGCCGCCTGTTAAATCCCATTTTCCC
TCCTGTAGTACAGTCTTTCTATTTGGCGCTTGCTTTCTACCCGTACTAAT
TTGACCCGCGTTTTTTTTTATTTTTTCTCTTCCCTTTTCTCTATTTCTTC
TATTTATCCTATCTACTCATCTTTACCTTCTTTTTCTCTCCCTTAACTTT
TTTTCATTTTTCCCTCTTTTATCACTATTCCTTTTTTCCCCTTTTTCCTT
TTATCCCTCATATACACTTCCTCCTCTCCTTCCTCACCCCTACCTCCCCC
TCTTTATCCCCCTCCTTTTTTTCTCCATTTC
TGCAGCGGGAGGCCTGGGGGNCGCCTGTTCTACAACTTTAGGNGAACTAT
AGAAGTACCAGCAACAATCTGGAAAAGTAATCAGCATCCAAACGCTGACA
CCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAAATGTAGCTGT
CTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATACTCAC
AGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAA
GTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAATATTA
TGAACTAACCAGTATCTTTGGAGCTCTTGACTCTAGCTGCATATGTATCA
AAAGATGACCTAGTCAGCCATCACTGGAAAGAGAGGCCCATTGGACACGC
AAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAG
TGGGTGGGTAGGGGAGTGCTTTCTTTCTTCCCCTTCCCTTCTCCCCCTCC
TTTTTCTTTTCTCCTTTCTTTTTCTTCCCCCTTTTTCCTCCCCCTCTTCT
CTTTCTCTTCTCCCCCCTTTTCTCCCCTCCCCCCTCACCTTCCCCCTTTT
CTCCCTCTCCTTTCCCCCTCCTTTTTTCTTCTTCTCTTTTTCTTTCCCTT
TCTTTTCTTTTCTCCTTTTTTTTTTCTTCTCTTTCTCCTTTCTCCTTTTT
TTCCTCCCTTTTCCCCTTCTTTCTTTCCTTTTTTTCCTTCTTCTCCCTCC
CCCCCTCTTTCCTCCTATCCTTTTATCTTTTTCTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_k17.b1 MSMg01no469_k17.b1 CHROMAT_FILE:
MSMg01no469_k17.b1 PHD_FILE: MSMg01no469_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:19 2005
         (240 letters)



>mm_chr13_112125144_112125779
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/238 (97%), Gaps = 4/238 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaacaaaatttaaacaatatccacaaaccccaaactaaaaacaaacaaacaaaaccc 60
           |||||||||||||||||||||||||||||||||||||| ||    |||||||||||||||
Sbjct: 434 aacaaacaaaatttaaacaatatccacaaaccccaaaccaa----aaacaaacaaaaccc 379

                                                                       
Query: 61  ccaaaccaaaaaccaaaccactaaagtgagaggctgttcaccatgttgatgaatgtacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccaaaccaaaaaccaaaccactaaagtgagaggctgttcaccatgttgatgaatgtacat 319

                                                                       
Query: 121 ccaaaggaaaatagacccaaaatggacatgtttccctagagaattttctactgttacagt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 318 ccaaaggaaaatagacccaaaatggatatgtttccctagagaattttctactgttacagt 259

                                                                     
Query: 181 actcagagaacttggcatttctgtgaattgataaccaggaagaacatcccctctgtca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actcagagaacttggcatttctgtgaattgataaccaggaagaacatcccctctgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 636
Length adjustment: 9
Effective length of query: 231
Effective length of database: 627
Effective search space:   144837
Effective search space used:   144837
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)