BAC Information

Click to search

BAC

Clone NameMSMg01-469N15
Chromosome13 (Build37)
Map Location 51,318,584 - 51,318,772
singlet/doubletsinglet
Overlap geneLOC667733
Upstream geneLOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728
Downstream genePpia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469N15.T7 (MSMg01no469_n15.b1)MSMg01-469N15.TJ (MSMg01no469_n15.g1)
ACCAG552990AG552991
length777756
length of high quality
(start - end)
189 (125 - 313)239 (72 - 310)
definitionCHROMAT_FILE: MSMg01no469_n15.b1 PHD_FILE: MSMg01no469_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:34 2005CHROMAT_FILE: MSMg01no469_n15.g1 PHD_FILE: MSMg01no469_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATCATTCGCGTCGTTAAACGAATCACTTTCAAAACAGGATCCGCGGAA
ATCTTCTATCCCGAGAGAAGCACAGGATCAGCTGCTTCTGCTGGAACAAA
ACAGACTGGAAAGGGACACACGGGGACTGGATGGCAAAAGTGTCCTGTGG
GTAGAGTAATCTGGCCCAGTGAATGCATAATATTTGTCCAAACTTATTGA
ACGGGATACTTTCGATTGGGACACTTCTGCATGTGAAATTTTCCTCCAAC
AAAAGCTAAAAGTAAATATGAAATTGTAATAAACAAATGGGACGGTGCAG
TTCTTGAGAAAGCTTTTCTTCAGTGTCTACAATGTGCTTTAAATAGAAAG
AAACAGAAGAGGGGTCAATGGTGAGCAGTGGATGTGTGGGTGGATGAAGC
AAGAATCATAAAAATTTAATGGCGGGATAGAGCTCATGCGATTGTTTTCT
TTAAAACTTTCATAGTTTCTTTAGCTTAACATTTAAAAAAAATATATGGA
CTGTTGAACGGAACAGAATACATGTGGTAAGCTTTAAATACCTCCTGCTC
TATGTTTCTTGTTACTGGTTCCAATTTCCCCTACACTCTCCCCTCACTGT
GCTTCTCGCCACCCCTTAGATTACGATTTTCTCTACTGCTTTCCCCTTTT
TTTACCCTTCTTTCCTAACGCCCCCGCTACCATGATTTACCCTTCCCCCT
TCTCTCCCCTTATCCATTCTTTTTCCCTTTCCCCCTTTTCTCTCTTCTTT
CTTTTACATTCCCCCGCCCTCTCTCGT
CATTGCTGTGGGAGGCCTGGGGGNCGCCGGTTCAACATCATGAGGTGAAC
TATAGAATATCAGAACAATTCAGGACCTCTGGAAGAGCAGTCAGTGCTCT
TAACCTCTGAGCTATCTCTCTAGCCTCATGTGCCAATTTTTTTTTTATTT
TATTTTTTATTAGGTATTTAGCTCATTTACATTTCGAATGCTATACCAAA
AGTCCCCCATATCTACCCACCCCTCATGTGCCAATTTTTAATGTTCATTT
ATTTACATGCATGTGTCTATGTGAGTGTGTGTACGTGTATGTGTGGGTAC
CTGGGGAAGCTTGAGTGGNATCAGATCCCTTGGCACTAGAGTGGCAGTGA
GCCACTTGATGTAGGTGCTAGAAACAGAACTCTGGTCTCTGCAGGAGTCA
CAAAGTGTTCTTAACTGCTGAGCCATCTCTAGCCATACCACATATTAGTT
TAGTACCAGCATCTTCTCTGGAGATTACTAATTAGCTTCCTTTTATCTAT
GAGCACAGCTTGCCTACTGAGATCAGCCATCACACCGCTGTTCACAATGA
CACAGTTGAGGCTGCTCACACTGGTTTCTTTCTTTCTTTCCTTCCCTCCT
TCTTTCCTTCTTTCATTTTTTCTTCCTTTATTTCCCCTTTCCCTTTTTCT
TTTTGTTCCTCTGGCCTCGATGCGCCTTTCTTCCCCTTTTTTTATTTCCC
CCTTCTTCCTTCTTTTTTATCCGATAACCCCCCCCCCCCTTTTTTTTCCT
TCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_n15.b1 MSMg01no469_n15.b1 CHROMAT_FILE:
MSMg01no469_n15.b1 PHD_FILE: MSMg01no469_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:34 2005
         (189 letters)



>mm_chr13_51318384_51318972
          Length = 589

 Score =  327 bits (169), Expect = 3e-94
 Identities = 184/189 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactggatggcaaaagtgtcctgtgggtagagtaatctggcccagtgaatgcataatatt 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 389 gactggatggcaaaagtgtcctgtgggtggagtaatctggcccagtgaatgcataacatt 330

                                                                       
Query: 61  tgtccaaacttattgaacgggatactttcgattgggacacttctgcatgtgaaattttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 329 tgtccaaacttattgaacgggatactttcgattgggacacttctgcatgggaaattttcc 270

                                                                       
Query: 121 tccaacaaaagctaaaagtaaatatgaaattgtaataaacaaatgggacggtgcagttct 180
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 269 tccaacaaaagctaaaagtaaatatgaaattgtaattaacaaatgagacggtgcagttct 210

                    
Query: 181 tgagaaagc 189
           |||||||||
Sbjct: 209 tgagaaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)