BAC Information

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BAC

Clone NameMSMg01-470A04
Chromosome13 (Build37)
Map Location 101,997,420 - 102,192,734
singlet/doubletdoublet
Overlap gene4933416M06Rik, LOC100039971, LOC100039983
Upstream geneNaip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream genePik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470A04.T7 (MSMg01no470_a04.b1)MSMg01-470A04.TJ (MSMg01no470_a04.g1)
ACCAG553112AG553113
length742826
length of high quality
(start - end)
403 (76 - 478)248 (80 - 327)
definitionCHROMAT_FILE: MSMg01no470_a04.b1 PHD_FILE: MSMg01no470_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:46 2005CHROMAT_FILE: MSMg01no470_a04.g1 PHD_FILE: MSMg01no470_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,997,420 - 101,997,822)(102,192,488 - 102,192,734)
sequence
GTGTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGAAGATTTATTGGTCTTCTGTCCGTGTTGGAAGGCTG
AAGAAGCTGGGTTCTTATGTCAGCAAAGGATAATGGTGGTAACAGCAGTG
GTAGTCAGAGAGCCACCACCACTACCACCACCAGAGTTGACAAACTCATA
AGCAAGGGGTAATTCAAGCAGGCAAAAAGCAGATGTCTTCTTCCGGACTT
CTTTATATCTGGGCTGCTGCAGGAAGGTGCTGCTACCCACTCTGGTGAAA
GGTCTTCCCTTCCCAATGGATTCTTCCAGGTATGTCTTTTAGTTGATTCC
AGATCCAATGACCTTGACAACCATTGCCTTTGAGGTCTGAGAAGAATCCC
AAGATTCTTGTGTAGGTAGGTTCATTGATCCCATAAGTGATTGGAAAGGA
AGCTGGTGAAAAGTCTTACAGTATCCCAGGAGCAGAGTTCGGTGGACTTG
AGATTTGAATTTGAAATGTCTTCTACAGGCTTAATCTTTTAAAAATTACA
ATATATATTGTGTGTGCATGCATGTTTGCATGCATAGCGCAAGGGTGGCA
CATGCGCCTGTGTCCCGATATGTATATATGTGCATGTTGCCAGGACCACT
TTTTGGGCACTGGATTTTCTTCCTCTTATCATGGGGCTCCTGCTCAATTT
GTACCCTAGTCNTTCTAGTCCTGTCGTTTATGCCACTTCCCN
TGGCGCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACTCTAAGGCCTTTGCTAG
TAAGGCTGAACTGGAACGAGACACTTTCCAACGCCTCCCTAAATTAATCT
TAGTCTCATCCTCAGTGGCCACTCTCATAATCGAATAGGGCCTTTTTTCC
CAGCATTCAACTGTGGCAGTCACCCATTCATTTCCCCCTTCCACTTTCTA
CTCTGAGGAAATAGAGGACACAGGATTGGTGATCACCCCTTAATCCATGA
AATCAAATGCAGTGATTTTTTTGCCCTTTTTTTAGAACTTGAATTTGTGT
TTTGATTGTTGCTGTTATTGTTTTGTTTGTTGTCGCCGTTATTGTTTTAC
TATACCCCTCTTTTATATCCCTCCCCCCCCTTCTCTTCCTCCCTCTTTTT
TCTTCTTCTCCCTCCTTCTCTCTCTCCTTTACCTCTTTTGCTTTTTCTCT
CTCTACCCCCTTTCTACCCCTTTTTTCTTTCTCCTCTCTGCCCCTTTCTT
CCCTTCTTTTTTGTCCCCTTCTTCTTTCCCACCTTTATCCCTTTCTTTCC
CCATCCTTCTCCCCTTTTTTTCCCGCCCCCTCCCCCTTCTTTCACCTCTT
TTTTTCCTCTTCTTTTCTCTTCTACTCAACTCCTCCCTTTTCCCTTCTTG
TTTCTCTCCCCCCTTTTGTCATCGATCGCCCTTTCTATATTTTTACCCAC
TTTTTCTTGTCCTCCCGATCCCCCTTCTGTCTTCCCTCCCGTCTCCATGT
CCTTTCTTTCATACTCCTCCACCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_a04.b1 MSMg01no470_a04.b1 CHROMAT_FILE:
MSMg01no470_a04.b1 PHD_FILE: MSMg01no470_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:46 2005
         (403 letters)



>mm_chr13_101997220_101998022
          Length = 803

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcttctgtccgtgttggaaggctgaagaagctgggttcttatgtcagcaaaggataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcttctgtccgtgttggaaggctgaagaagctgggttcttatgtcagcaaaggataatg 260

                                                                       
Query: 61  gtggtaacagcagtggtagtcagagagccaccaccactaccaccaccagagttgacaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtaacagcagtggtagtcagagagccaccaccactaccaccaccagagttgacaaac 320

                                                                       
Query: 121 tcataagcaaggggtaattcaagcaggcaaaaagcagatgtcttcttccggacttcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcataagcaaggggtaattcaagcaggcaaaaagcagatgtcttcttccggacttcttta 380

                                                                       
Query: 181 tatctgggctgctgcaggaaggtgctgctacccactctggtgaaaggtcttcccttccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctgggctgctgcaggaaggtgctgctacccactctggtgaaaggtcttcccttccca 440

                                                                       
Query: 241 atggattcttccaggtatgtcttttagttgattccagatccaatgaccttgacaaccatt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 atggattcttccaggcatgtcttttagttgattccagatccaatgaccttgacaaccgtt 500

                                                                       
Query: 301 gcctttgaggtctgagaagaatcccaagattcttgtgtaggtaggttcattgatcccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctttgaggtctgagaagaatcccaagattcttgtgtaggtaggttcattgatcccata 560

                                                      
Query: 361 agtgattggaaaggaagctggtgaaaagtcttacagtatccca 403
           ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 agtgattggaaaggaagctggtgaaaagtcttagagtatccca 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no470_a04.g1 MSMg01no470_a04.g1 CHROMAT_FILE:
MSMg01no470_a04.g1 PHD_FILE: MSMg01no470_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:47 2005
         (248 letters)



>mm_chr13_102192288_102192935
          Length = 648

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactctaaggcctttgctagtaaggctgaactggaacgagacactttccaacgcctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccactctaaggcctttgctagtaaggctgaactggaacgagacactttccaacgcctccc 388

                                                                       
Query: 61  taaattaatcttagtctcatcctcagtggccactctcataatcgaatagggccttttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taaattaatcttagtctcatcctcagtggccactctcataatcgaatagggccttttttc 328

                                                                       
Query: 121 ccagcattcaactgtggcagtcacccattcatttcccccttccactttctactctgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccagcattcaactgtggcagtcacccattcatttcccccttccactttctactctgagga 268

                                                                       
Query: 181 aatagaggacacaggattggtgatcaccccttaatccatgaaatcaaatgcagtgatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatagaggacacaggattggtgatcaccccttaatccatgaaatcaaatgcagtgatttt 208

                  
Query: 241 tttgccc 247
           |||||||
Sbjct: 207 tttgccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)