Query= MSMg01no470_c20.b1 MSMg01no470_c20.b1 CHROMAT_FILE:
MSMg01no470_c20.b1 PHD_FILE: MSMg01no470_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:00 2005
(537 letters)
>mm_chr13_25548897_25549833
Length = 937
Score = 940 bits (486), Expect = 0.0
Identities = 525/538 (97%), Gaps = 2/538 (0%)
Strand = Plus / Plus
Query: 1 atagatttttttcttaagtgttgttttaaaatctgtttattaagtacgaacaacaattga 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atagatttttttcttaagtgttgttttaaaatctgtttattaagtatgaacaacaattga 260
Query: 61 tcaaaattgactcacaccttacgtttgcaagtgcaaacgattttcctgccctagagaatt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaattgactcaaaccttacgtttgcaagtgcaaacgattttcctgccctagagaatt 320
Query: 121 tctcggtcttttccaggact-cagaattcaacagcaatattcatgactggtttagaaaga 179
|||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcagtcttttccagg-cttcagaattcaacagcaatattcatgactggtttagaaaga 379
Query: 180 tggcttttatatctggagagctggatcaacgctcctcatgcacttagtatccaaggtgca 239
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 tggcttttatatctggaaagctggatcaatgctcctcatgcacttagtatccaaggtgca 439
Query: 240 gaggttgttcctactaagaatcaggccttcttttgcttgagtttcacctctcagcatgaa 299
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagggtggccctactaagaatcaggccttcttttgcttgagtttcacctctcagcatgac 499
Query: 300 gttcccaggtcagctgcaacatcacccaaggaggaacttgttcaaaatataaaatcttgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttcccaggtcagctgcaacatcacccaaggaggaacttgttcaaaatataaaatcttgg 559
Query: 360 gcctcagctgttgaatcagatatgctaggagtatatgaattttaacatgtcctataggtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcctcagctgttgaatcagatatgctaggagtatatgaattttaacatgtcctataggtg 619
Query: 420 aacctgacagaggattcttggtgagagagggtcactttgattttatagtatgggggtaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacctgacagaggattcttggtgagagagggtcactttgattttatagtatgggggtaca 679
Query: 480 tttgtgtatacatctgtgcataaattgtaaacaggtatggcttccctactaataggtc 537
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 680 tttgtgtatatatctgtgcataaattgtaaacaggtatggcttcactactaataggtc 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no470_c20.g1 MSMg01no470_c20.g1 CHROMAT_FILE:
MSMg01no470_c20.g1 PHD_FILE: MSMg01no470_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:00 2005
(485 letters)
>mm_chr13_25752387_25753271
Length = 885
Score = 911 bits (471), Expect = 0.0
Identities = 480/483 (99%)
Strand = Plus / Minus
Query: 1 tttaaataatgcatcagtaaaaattcattagtgagtatattgataagtatataataataa 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttaaataatgcatctgtaaaaattcattagtgagtatattgataagtatataataataa 624
Query: 61 taaatgaactatatagtaatgataaaagtattatattaagcatatgtaactttaaagcaa 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taaatgaactatagagtaatgataaaagtattatattaagcatatgtaactttaaagcaa 564
Query: 121 ttttaaatgaaaggttatttttaataaattgcagatttaaactaactatatctcaaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttaaatgaaaggttatttttaataaattgcagatttaaactaactatatctcaaagta 504
Query: 181 atttaaatatatacaccactaacagggaaataattttaggtcatctgtatatttatgact 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 atttaaatatatacaccactaacagtgaaataattttaggtcatctgtatatttatgact 444
Query: 241 tttatcagagcatcagactttcccagatggattccaaggaagcttattattttctagtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttatcagagcatcagactttcccagatggattccaaggaagcttattattttctagtta 384
Query: 301 aaattcaggagaagttttcaataagaaattgagttgccaaccacagagagaatcagaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaattcaggagaagttttcaataagaaattgagttgccaaccacagagagaatcagaatt 324
Query: 361 ggagatggccagagaaatttggccaaacagtccaaagatttgaggttaactttaccagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggagatggccagagaaatttggccaaacagtccaaagatttgaggttaactttaccagtg 264
Query: 421 ctcatgtctgatcttaccacatgaagtgtaatggtttccattattgctggcccaggtatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcatgtctgatcttaccacatgaagtgtaatggtttccattattgctggcccaggtatg 204
Query: 481 acc 483
|||
Sbjct: 203 acc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
