BAC Information

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BAC

Clone NameMSMg01-470D06
Chromosome13 (Build37)
Map Location 89,025,036 - 89,186,110
singlet/doubletdoublet
Overlap geneEdil3
Upstream geneLOC667230, EG435375
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470D06.T7 (MSMg01no470_d06.b1)MSMg01-470D06.TJ (MSMg01no470_d06.g1)
ACCAG553260AG553261
length718734
length of high quality
(start - end)		244 (86 - 329)526 (85 - 610)
definitionCHROMAT_FILE: MSMg01no470_d06.b1 PHD_FILE: MSMg01no470_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:02 2005CHROMAT_FILE: MSMg01no470_d06.g1 PHD_FILE: MSMg01no470_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,185,867 - 89,186,110)(89,025,036 - 89,025,561)
sequence
CCCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGACAC
CATCCGCGGAATTCAGTTATTTTTCACGAATGTCCAGCTTACTGTATTAT
GAGATAAGGGGATGTTGAAAAAGACTTGCATGTACCATTGTGGGGAATGT
GAGCAAGAATAATCTTATACTTCCCCATCTCTAATGATATACATGAGAGA
GCTCAGCCAACCATAGTCAGTAGCCACAGGCAGATGGAAATATCTCCAGT
AAAAACATTCAAAAATAAATCACCTTGTTGAGAAACAAATGATGGCATTG
CTACCGATCACCAAATAAAATGGAAAGAAATTTTATTGTAATGGATTACG
AAAATAAGTTCTGGAGATGTGAGGGAATGTTATATTACTGCATAGACTTT
ATTCATTGAAAAGTGATTTGGTTTTCTAACATCTTTTTAAAGAAGAAACC
CCAATTTCACACCCCTTCAACTGTAATCCCCGCGAAATTTTACATAATGG
AGTTATACGCGACATTGGCGCCGGTTTATGCATCATCTCCAAAATATGTA
TTTTTTCCATTACCCATACTTAATGAATATAAATTATTCATTCGAAGCAC
ACTACTACGACACCATCATGCACATCCGCAGGTACTATCATGTACGATAC
CGCCCGTATATCCATTTTTTCGCCACTTTATGACCATCCCCCCCCTTCCC
CATCCCCTGTACTCCCTT

TTTTTNCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCCAATTCTCACT
TCGATCAGCTACACTTACCTTGATTTTTGTTGACAAAATGGTAATTTCCC
TATATTCTCTATCTGAACTTTTACTGCACAAACCTGTTCTAAGTATTACA
TTTACAATTAAATATGATCTAGAAGTCTTAAGAAATACAGGTGTCTTGCT
TATGGAAGCAAGTCTAAGTCAATTAGTGCTGGTATCGCTTTGACATCATA
TGTCTTAGGAACTAACTAATGTATAATTATATCTTACAAAATGTTTTAGG
AAATCTATTTTACTTTTTATAGTTACTATTTAGTCTCATAACTATGTTGT
CTCCTCATTAGATATTATTTAAAATGCAAAGAAAAACAAATTGAATGTTA
CAACAATTGGGTGACTAGCCTAAGATTAATACTACTAGTTCAATGAAGCC
ATAGCATTTTATACAAGATTTATTTATTGCTGGAAGACTCTTAGTATTTT
GAAGCAAGCTGCTTCTGTATTGAATGAATAAGACATATAGTAAAATCCAT
TTTATGCTGTCAAAATCTTCATACAAATAGATATTGTTTATATAAGTGTA
TACCTGTATTAATTACATTCCTACTCTAGGAATATGAAAATAAAGCGGTT
CAATTGAATAAAAATTGGCATGTCCTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_d06.b1 MSMg01no470_d06.b1 CHROMAT_FILE:
MSMg01no470_d06.b1 PHD_FILE: MSMg01no470_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:02 2005
         (244 letters)



>mm_chr13_89185667_89186310
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttactgtattatgagataaggggatgttgaaaaagacttgcatgtaccattgtgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcttactgtattatgagataaggggatgttgaaaaagacttgcatgtaccattgtgggg 385

                                                                       
Query: 61  aatgtgagcaagaataatcttatacttccccatctctaatgatatacatgagagagctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatgtgagcaagaataatcttatacttccccatctctaatgatatacatgagagagctca 325

                                                                       
Query: 121 gccaaccatagtcagtagccacaggcagatggaaatatctccagtaaaaacattcaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 gccaaccatagtcagtagccacaggcagatggaaatatctccagtaaaaactttcaaaaa 265

                                                                       
Query: 181 taaatcaccttgttgagaaacaaatgatggcattgctaccgatcaccaaataaaatggaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 taaatcaccttgttgagaaacaaatgatggcattgctacagatcaccaaataaaatggaa 205

               
Query: 241 agaa 244
           ||||
Sbjct: 204 agaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no470_d06.g1 MSMg01no470_d06.g1 CHROMAT_FILE:
MSMg01no470_d06.g1 PHD_FILE: MSMg01no470_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:02 2005
         (526 letters)



>mm_chr13_89024836_89025761
          Length = 926

 Score =  971 bits (502), Expect = 0.0
 Identities = 520/526 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagccaattctcacttcgatcagctacacttaccttgatttttgttgacaaaatggtaa 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ccagccaattctcacttcgatcagcttcacttaccttgatttttgttgacaaaatggtaa 260

                                                                       
Query: 61  tttccctatattctctatctgaacttttactgcacaaacctgttctaagtattacattta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tttccctatattctctatctgaacttttactgcacaaacctgttctaagtattacattca 320

                                                                       
Query: 121 caattaaatatgatctagaagtcttaagaaatacaggtgtcttgcttatggaagcaagtc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattaaatatgatctagaagtcttaagaaatacaggtgtcttgcttatggaagcaagtc 380

                                                                       
Query: 181 taagtcaattagtgctggtatcgctttgacatcatatgtcttaggaactaactaatgtat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 taagtcaattagtgctggtatcgctttgacatcatacgtcttaggaactaactaatgtat 440

                                                                       
Query: 241 aattatatcttacaaaatgttttaggaaatctattttactttttatagttactatttagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattatatcttacaaaatgttttaggaaatctattttactttttatagttactatttagt 500

                                                                       
Query: 301 ctcataactatgttgtctcctcattagatattatttaaaatgcaaagaaaaacaaattga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcataactatgttgtctcctcattagatattatttaaaatgcaaagaaaaacaaattga 560

                                                                       
Query: 361 atgttacaacaattgggtgactagcctaagattaatactactagttcaatgaagccatag 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttagaacaattgggtgactagcctaagattaatactactagttcaatgaagccatag 620

                                                                       
Query: 421 cattttatacaagatttatttattgctggaagactcttagtattttgaagcaagctgctt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 cattttatacaagatttatttattgctggaagactcttagtattttgaagcaagctgcgt 680

                                                         
Query: 481 ctgtattgaatgaataagacatatagtaaaatccattttatgctgt 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtattgaatgaataagacatatagtaaaatccattttatgctgt 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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