BAC Information

Click to search

BAC

Clone NameMSMg01-470D13
Chromosome13 (Build37)
Map Location 23,585,744 - 23,585,924
singlet/doubletsinglet
Overlap genenone
Upstream geneV1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
Downstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470D13.T7 (MSMg01no470_d13.b1)MSMg01-470D13.TJ (MSMg01no470_d13.g1)
ACCAG553274AG553275
length747756
length of high quality
(start - end)
181 (383 - 563)510 (73 - 582)
definitionCHROMAT_FILE: MSMg01no470_d13.b1 PHD_FILE: MSMg01no470_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:03 2005CHROMAT_FILE: MSMg01no470_d13.g1 PHD_FILE: MSMg01no470_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTTCACACATCCCCGGAA
NTCCTGCTTTTTCTCCCCACCCTCTTCGCGGAGCAGACCAGGAGAACAAA
CAGTACACTGAAGTATTGTTCCATAAAGCAAGGAGACTTGGGCCAGGGTG
GCTGCAGGAGTAGCTGTGAGGATACGTTTAACAAGGCTTGTTTGTGCAGA
ATTCTGTGGGCCTCTACTTTTTTATCTTTGATGATAAGAATGAGAACAGT
TCTCAACAGGAAATTTCATTGGTTTACAAAAAGAAGTACATGCATAGCCA
AGCTTTTTGCTTGCTGTNNTTCATTTGCCTTTAATTCAAACTGCCAGACC
TCGGCAGACTTTATAGACCCCAGGCAGCAGTTCAAGCTGGAAGAAGCCAG
AGTCTCCTGCCCTGCTGATCTGAAATCAAAGTTCTGGAGATGATACCAGG
ACACAGCAGGTAGATGTGTCTCTAAGACATCTTTCTCTAGCCTGGGATCT
GGAGCCTTATTTTTGTAAGGAGTTAGATATTAAATATTTTCTACTGTTGT
ATGGTGTGGTCGCAGATGAAGCTGGATTTGGCTGTGGCAACAAAATTTAA
TGTACAGGCTGGCCACACCGTTCCGTTGGCAAAGCGCTTGCCCTGCCAGT
CTTATTATCCCATCGTCTGACCCTTAGAACCCACATCANAAAGCCAAGCT
CTGCCCTTCCGCTCCACTCCAGACTCGACTCCCGCGCCTACCTTGCC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAAATTCTTTGTTTAACTCTGTATCCCATTTTT
TAATTGAGTTATTTGGTTTTCTGGAGTCTAACTTCTCGAGTTCTTTGTAT
ATTTTGGATATTAACCCTCAATGGGATATAAGGTTGGTAACAATCTATTC
CCAGTCTGTAGGTTGAAGTTTTGTCCTATTAACAGTGTCCTTTGCCTTAC
AAAAGCTTTTTAGTTTCATGAGGTTCCATTTGTCAATTGTTGATCTTAGA
GCCTGAGTCATTGGTATTCTGTTTATGAAATTTTCCCCTCTGCCAATGTG
TTCGAGGCTATTTCTCACTTTCTTTTCTATTAGATTCAGCATGTCTGGTT
TATGTGGAAGTCCTTGATCCACTTGGGCTTGAGCTTCGTACAAGGAGATA
AAAATGGATCAATTTGCATTCTTCTACTTGCAGACTGTCAGACCGGCACC
ATTTGTTGAAGATACTTGTATGTACTCACTGATAAGTGGATATTAGCCCT
AAAGCTCAGAATATGCACAACACAACTCACAGACCATACAAAGCTTAACA
AGAAGGAAGGTCAAAGAGTGGATGCTTTAATCCCACTGAGATAAAATAAT
CACAGGAGGTATATGTAGGGAGGGATCCTGGCCGGCAAAACGCTATCTTC
CTCCCTTCCCTTTTCACACCTATACTCCCTTATCTTCCTTCCTCTTCCGT
TTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_d13.b1 MSMg01no470_d13.b1 CHROMAT_FILE:
MSMg01no470_d13.b1 PHD_FILE: MSMg01no470_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:03 2005
         (181 letters)



>mm_chr13_23585544_23586124
          Length = 581

 Score =  342 bits (177), Expect = 6e-99
 Identities = 180/181 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagctggaagaagccagagtctcctgccctgctgatctgaaatcaaagttctggagatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 caagctggaagaagccagagtctcctgccctgctgatctgaaatcagagttctggagatg 260

                                                                       
Query: 61  ataccaggacacagcaggtagatgtgtctctaagacatctttctctagcctgggatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataccaggacacagcaggtagatgtgtctctaagacatctttctctagcctgggatctgg 320

                                                                       
Query: 121 agccttatttttgtaaggagttagatattaaatattttctactgttgtatggtgtggtcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccttatttttgtaaggagttagatattaaatattttctactgttgtatggtgtggtcg 380

            
Query: 181 c 181
           |
Sbjct: 381 c 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)