BAC Information

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BAC

Clone NameMSMg01-470K09
Chromosome13 (Build37)
Map Location 16,545,876 - 16,546,297
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470K09.T7 (MSMg01no470_k09.b1)MSMg01-470K09.TJ (MSMg01no470_k09.g1)
ACCAG553602AG553603
length955751
length of high quality
(start - end)
---422 (77 - 498)
definitionCHROMAT_FILE: MSMg01no470_k09.b1 PHD_FILE: MSMg01no470_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:38 2005CHROMAT_FILE: MSMg01no470_k09.g1 PHD_FILE: MSMg01no470_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAATAATCTCCGCGGNCGCTCAANACGAANNCACCCACAGTTGCGTCA
CCCTCGCGCCGGAANNNCNAACCAAGATTTCCTAACACCCACCGCACCCT
AAANNACATTGGNNCACAAAGTAACTGGAAACGTCACCTGCGAGACTTTG
GCTCCCCAGTATCCTAAAACTACCCTCGTACTCTCTCTGTCTTTATGCTC
AACTTTCGACGCGGTGAGTAGAGCCCAGCCAGAAGAGGTAGGGCACGCCT
CCAATCTGACGAAACATGTCCTCCTATAGGCATCCAGCGCAAACCCTCTC
TAATCTAGTCGATTATCTGTGCCCACAGGCCCCAGCCTTATTCGTGCAGT
GGCGCCACACCCTCGAGCCTTGTGCCCCCTGGGCCTCTACTTTTTTTTTT
TTACCTGATCCAAGCCCACAGGGGAGACCACTTCAGTACCCTCATTTCTC
TCTCCCATGGCCCTTCTCGCATCAGACTCCCTGCCCTCTCAGGCTTCCCT
GGCCCTGCTCTGCATTTCCCTCGCCTCTCACTACTTTTTCCGATGGCGCA
GCCTCGTTACCCTGGCAACATGCTCCCAAACTAAACTCATTCTCCTTCCC
CCAAGTCTGCCTCTTTGCCCCATGCACTGCTTTCCTTCCCCCGCCGACCA
AAACACCTCCTAACTACATACTGCTACCTCTCCCCCACCCGCCCATAGCC
ACATAACCCCCCCCCCCCCCCCCTTCCCCCAATCATGTCTGTCTCTCTCT
CCCCCCCTCCTCCCCATACCCTCACTGGCCGATTGCATACCTCGCCTCCG
CTGGCTTCGCCCCACTCCCTCTTTCCTCTCTTATTTACACCTGTATCCCG
ACCCCCCTCCCCTTTCCCCAATCCCCTCTCCCCACACTCCTTCTTTCCCG
TCCCCACCTCCCCCGCTCACTTTCCGCGCATCCCCCTCTTTTCCCCGTTC
CGCCG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCAGAAAATCCAGACTTTCCCTGTACAGCCACAGA
ACACCATAGACACTCAGCATATTACCTTCCATCTTCTGACGTGGGGGCAC
ATTTGAGTGAAATTGAACTAGAAAAAGCCCCTTTGAGCCCATTGAAACAG
GGGCATGCCATCTGCCCTCTATTTGTGACCAGAAAGCTCATGCAAAAGAA
CTACAGGATGCTAACCATGAGTTAAGAAAATGTTACTAAAGAAGAAAGTG
TCCCACTTGTCCTGTAACAAGTTTCTTACCCAGGCTTTATGGGAAGAAGC
AGCAGGTTAACCTGCCCTTCCTGCCTACCATCAAGCAAACCTCAGTGAGA
TCCAAGAAATCGCACAGTGGCCAAACATGAGGCTGCTTTTTATATCTATT
GTTTTTATGGCAAACAGATGTGCTTGGTACCTACATTTAAGTACTCATTG
ATTTACATGTTGATTTTGCAGACTCATACAAACTACAGCATACGCTCTGT
TTGTCCCATTCCTGAGGGGGGAACATGCAGACTGTCCCTCGTGCTAGAGC
TGTGATCCTGCTCCTCCTCAAGTTCCCCCCCCCACCGAGATAAAGTCGCC
TATCGGCTTCCTGTTTTTTACTCCCTTTTGTGCACAATTTCCCCACTCGA
TTGCCATCCCCGTTATAAACTCCCGTCGCTTATACTATCCCCCTCCTCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_k09.g1 MSMg01no470_k09.g1 CHROMAT_FILE:
MSMg01no470_k09.g1 PHD_FILE: MSMg01no470_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:38 2005
         (422 letters)



>mm_chr13_16545676_16546497
          Length = 822

 Score =  754 bits (390), Expect = 0.0
 Identities = 414/422 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agactttccctgtacagccacagaacaccatagacactcagcatattaccttccatcttc 60
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 622 agactttccctgtacagccacagaacaccatagaaactcagcaaattaccttccatcttc 563

                                                                       
Query: 61  tgacgtgggggcacatttgagtgaaattgaactagaaaaagcccctttgagcccattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgacgtgggggcacatttgagtgaaattgaactagaaaaagcccctttgagcccattgaa 503

                                                                       
Query: 121 acaggggcatgccatctgccctctatttgtgaccagaaagctcatgcaaaagaactacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acaggggcatgccatctgccctctatttgtgaccagaaagctcatgcaaaagaactacag 443

                                                                       
Query: 181 gatgctaaccatgagttaagaaaatgttactaaagaagaaagtgtcccacttgtcctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gatgctaaccatgagttaagaaaatgttactaaagaagaaagtgtcccacttgtcctgta 383

                                                                       
Query: 241 acaagtttcttacccaggctttatgggaagaagcagcaggttaacctgcccttcctgcct 300
           ||||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acaagtcccagacccaggctttatgggaagaagcagcaggttaacctgcccttcctgcct 323

                                                                       
Query: 301 accatcaagcaaacctcagtgagatccaagaaatcgcacagtggccaaacatgaggctgc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 accatcaagcaaacctcagtgagatccaagaaatcgcacagtggccaaacatgaggttgc 263

                                                                       
Query: 361 tttttatatctattgtttttatggcaaacagatgtgcttggtacctacatttaagtactc 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 tttttatatctattgtttttatggcaagcagatgtgcttggtacctacatttaagtactc 203

             
Query: 421 at 422
           ||
Sbjct: 202 at 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)