Query= MSMg01no471_c19.b1 MSMg01no471_c19.b1 CHROMAT_FILE:
MSMg01no471_c19.b1 PHD_FILE: MSMg01no471_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:20 2005
(582 letters)
>mm_chr13_46823105_46824087
Length = 983
Score = 963 bits (498), Expect = 0.0
Identities = 518/526 (98%), Gaps = 4/526 (0%)
Strand = Plus / Minus
Query: 1 cagtattcgtgtcgagtgcccttctgaatctaaacaagcagccaaccgccgccaaatgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cagtattcgtgtcgagtgcccttctgaatctaaacaagcagccaaccgccgccaaatgac 464
Query: 61 ccgggctttgtgcctctgcggtgctccgtgggtgtccttccgctatcgcctgcctttccg 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 463 ccgggctttgtgcctctgcggtgctccgtgggtgtccttccgctatagcctgcctttccg 404
Query: 121 agaatccgcgttctggccagaaaaactacatttcccagaggctcccacgacagggagcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agaatccgcgttctggccagaaaaactacatttcccagaggctcccacgacagggagcgc 344
Query: 181 gggctcggccaacccttccttccttcacccat-cccccccgcattgtcgcagcgtgatga 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 343 gggctcggccaacccttccttccttcacccatccccccccgcattgtcgcagcgtgatga 284
Query: 240 cgcaaagcgtctttcgcggaggagtgacggtgttctggctcgcgaccggggcggccgcct 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cgcaaagcgtcggtcgcggaggagtgacggtgttctggctcgcgaccggggcggccgcct 224
Query: 300 caacagcggtaataggcgcaagagcggcggcggcggcgacgactgcagggacgacgacgg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 caacagcggtaataggcgcaagagcggcggcggcggcgacgactgcagggacgacga--- 167
Query: 360 cggcggcggcggcggtggggcgggcgcagcgcgcacagggggaggggttggcgggcggcg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 cggcggcggcggcggtggggcgggcgcagcgcgcacagggggaggggttggcgggcggcg 107
Query: 420 ccagcggcctggactgcggcagcgacggccagggcggctgaagaggagcctctagcagcg 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 106 ccagcggcctggactgcggcagcgacggccagggcgactgaagaggagcctctagcagcg 47
Query: 480 ggcggtcgagctaggcctcagcggcgcccggagctgctcgcgccgg 525
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ggcggtcgagctaggcctcagcggcgcccggagctgctcgcgccgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_c19.g1 MSMg01no471_c19.g1 CHROMAT_FILE:
MSMg01no471_c19.g1 PHD_FILE: MSMg01no471_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:20 2005
(606 letters)
>mm_chr13_46772330_46773337
Length = 1008
Score = 1102 bits (570), Expect = 0.0
Identities = 598/608 (98%), Gaps = 2/608 (0%)
Strand = Plus / Plus
Query: 1 aagttgaaatgtgcttcacccacacagctctggagtatttgattattatttctactgcga 60
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 201 aagttgaaatgtgcttcacccacacagctctggagtatttaattattgtttctactgcga 260
Query: 61 gtattgaggtcttcactgaggatatttttatttatacggtaaataagtagttaaaatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtattgaggtcttcactgaggatatttttatttatacggtaaataagtagttaaaatttg 320
Query: 121 ttatagtttaaataccagttaactagacaagttctttagatccagctgtgaattcaagtt 180
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 321 ttatagtttaaataccagttaactcgacaagttctttagatctagctgtgaattcaagtt 380
Query: 181 gtgccatataggatgtaagataaaagtattgctttgcctccacaatagaacctcagttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgccatataggatgtaagataaaagtattgctttgcctccacaatagaacctcagttat 440
Query: 241 aaggagaaaagggaatctggcacatttttccatgcccaagctgtatcctaaaggggcaaa 300
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 441 aaggagaaaagggaatctggcacatttttccatgccgaagctgtatcctgaaggggcaaa 500
Query: 301 atgaagatctttaatgagcatgccctaagcctggagtcttgttgctgcattgccattcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaagatctttaatgagcatgccctaagcctggagtcttgttgctgcattgccattcag 560
Query: 361 gctaaacaactggcaagtgatagtctc--agtactcatcactagggatgttctacactct 418
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 gctaaacaactggcaagtgatagtctctcagtactcatcactagggatgttctacactct 620
Query: 419 aggtaacagcatgacgacaaaccttactgagtattcgtgactataaacacatgccacttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggtaacagcatgacgacaaaccttactgagtattcgtgactataaacacatgccacttt 680
Query: 479 tgacagtgttcattgcttgactctgcctacaaagcacttacctaattgcccaagcctcaa 538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 tgacagtgttcattgcttgactctgcctacaaagcatttacctaattgcccaagcctcaa 740
Query: 539 aattgagtcttcaaaggatctttaaaagcattttaactttaaatgaaacaatcacacccg 598
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aattgagtcttcaaagtatctttaaaagcattttaactttaaatgaaacaatcacacccg 800
Query: 599 tttctggc 606
||||||||
Sbjct: 801 tttctggc 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1008
Length adjustment: 10
Effective length of query: 596
Effective length of database: 998
Effective search space: 594808
Effective search space used: 594808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
