BAC Information

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BAC

Clone NameMSMg01-471E06
Chromosome13 (Build37)
Map Location 20,257,278 - 20,257,891
singlet/doubletsinglet
Overlap genenone
Upstream geneTcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471E06.T7 (MSMg01no471_e06.b1)MSMg01-471E06.TJ (MSMg01no471_e06.g1)
ACCAG554073AG554074
length744756
length of high quality
(start - end)
627 (54 - 680)323 (82 - 404)
definitionCHROMAT_FILE: MSMg01no471_e06.b1 PHD_FILE: MSMg01no471_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:28 2005CHROMAT_FILE: MSMg01no471_e06.g1 PHD_FILE: MSMg01no471_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCGGTTCCTTTAGGTATGCTTTCTGTTGTTGTTTTCA
CTATGGGCGTGTGTGTTTGTGTGTGTTGGAGTCATGTGAAAGGGAAGGAA
GGAGTATCAAATGGGATGTCCTCATTCTGACACAGGAACCAGAGATCCCC
CAAATGTGCCACAATGCTAACAGCAGTCTCAAAGTTGTCTAACATAGGAT
TTCAGGTTCTACCAAATCCACTGCCGGGCTGTGTGACCTTCTAGGGTAGC
AGTCTTTGATATGCCATGGTCTAGGCTGTCATCATTTCAACATCGCTGTG
CCAGGGAAGCAAAAACACTGGTCACTATATCCAGGCCTTCCAGAGCCTAT
TTCTATTCATGTGTCTTTGGTACTTTTATCCATGTGTCTTTGACCTCAGT
AAATTATGCACACACACACACACACACACACACACACACACACACACACA
CACACACACAGTTGGCCTAACCTATCAGAAGCTAGAAGTATAATCCCCTG
GTGTGCCTAGAACCAACCCCCTTTTTTAATGTAAGAATCTGTGAAAGAGA
AACTGATGATAAGTGTATTATCATAATATTTAATGGTACTATGTTATAAT
TTGATAATATATTTGTCACAAATAATATTTGAGATGCTTCTGGGATATAT
AAGTAACTATGTTAAGTGAGCAGTTGAATATTGGGAGAAGGGGA
NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAACTAAAGATAAA
TGTACCATATGACTCACCCAGCTAGACCACCCCAAGGCATATGCCCAAAG
GACTCAGCAGCCCACTCCACAGATGCTCACATGGCTGTGTTCATTACTCG
CAATAGCTAGGAAAGGAAGACAACCCAAATGTCCTTTACCAGGTGAATGG
ATAATGAAAGTGAGATGCATACACAAAACAGACTACCACCCAGCTTTAAG
GAAAACTGGAGACTACACTTTTAGATGACTTCCCTTGGATCTGACCTGAA
AGCCTCTTTCTTGCAGTCTAGCTTGCCAAGAGGCGGGNNGGGGGGGGGGG
GATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_e06.b1 MSMg01no471_e06.b1 CHROMAT_FILE:
MSMg01no471_e06.b1 PHD_FILE: MSMg01no471_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:28 2005
         (627 letters)



>mm_chr13_20257075_20258101
          Length = 1027

 Score = 1091 bits (564), Expect = 0.0
 Identities = 605/626 (96%), Gaps = 14/626 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccc--ggttcctttaggtatgctttctgttgttgttttcactatgggcgtgtgt 61
           |||||||||  ||  |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccaggg--ccttgaggtatgctttctgttgttgttttcactatgggcgtgtgt 261

                                                                       
Query: 62  gtttgtgtgtgttggagtcatgtgaaagggaaggaaggagtatcaaatgggatgtcctca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtttgtgtgtgttggagtcatgtgaaagggaaggaaggagtatcaaatgggatgtcctca 321

                                                                       
Query: 122 ttctgacacaggaaccagagatcccccaaatgtgccacaatgctaacagcagtctcaaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttctgacacaggaaccagagatcccccaaatgtgccacaatgctaacagcagtctcaaag 381

                                                                       
Query: 182 ttgtctaacataggatttcaggttctaccaaatccactgccgggctgtgtgaccttctag 241
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 382 ttgtctaacataggatttcaggttctaccaaatccactgcagggctgtgtgaccttctag 441

                                                                       
Query: 242 ggtagcagtctttgatatgccatggtctaggctgtcatcatttcaacatcgctgtgccag 301
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 ggtatcagtctttgatatgccatggtctaggctgtcatcatttcaacatagctgtgccag 501

                                                                       
Query: 302 ggaagcaaaaacactggtcactatatccaggccttccagagcctatttctattcatgtgt 361
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 502 ggaagcaaatacactggtcactatatccaggccctccagagcctatttctattcatgtgt 561

                                                                       
Query: 362 ctttggtacttttatccatgtgtctttgacctcagtaaattatgcacacacacacacaca 421
           |||||||||||||||||||||||||||||||||||||||||||          |||||||
Sbjct: 562 ctttggtacttttatccatgtgtctttgacctcagtaaattat----------acacaca 611

                                                                       
Query: 422 cacacacacacacacacacacacacacacacacacagttggcctaacctatcagaagcta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cacacacacacacacacacacacacacacacacacagttggcctaacctatcagaagcta 671

                                                                       
Query: 482 gaagtataatcccctggtgtgcctagaaccaacccccttttttaatgtaagaatctgtga 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaagtataatcccctggtgtgcctagaaccaacccccttttttaatgtaagaatctgtga 731

                                                                       
Query: 542 aagagaaactgatgataagtgtattatcataatatttaatggtactatgttataatttga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aagagaaactgatgataagtgtattatcataatatttaatggtactatgttataatttga 791

                                     
Query: 602 taatatatttgtcacaaataatattt 627
           |||||||||||||| |||||||||||
Sbjct: 792 taatatatttgtcaaaaataatattt 817



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                        
Query: 412 cacacacacacacacacacacacacacacacacacacacacacac 456
           ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 990 cacacacacacacacacacacacacacacacacacgcacacacac 946



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                        
Query: 410 cacacacacacacacacacacacacacacacacacacacacacac 454
           ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 990 cacacacacacacacacacacacacacacacacacgcacacacac 946



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                        
Query: 408 cacacacacacacacacacacacacacacacacacacacacacac 452
           ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 990 cacacacacacacacacacacacacacacacacacgcacacacac 946



 Score = 80.0 bits (41), Expect = 5e-19
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                        
Query: 406 cacacacacacacacacacacacacacacacacacacacacacac 450
           ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 990 cacacacacacacacacacacacacacacacacacgcacacacac 946



 Score = 78.1 bits (40), Expect = 2e-18
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                       
Query: 414 cacacacacacacacacacacacacacacacacacacacacaca 457
           ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 990 cacacacacacacacacacacacacacacacacacgcacacaca 947


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 118
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 11
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)