BAC Information

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BAC

Clone NameMSMg01-471H06
Chromosome13 (Build37)
Map Location 20,291,904 - 20,292,511
singlet/doubletsinglet
Overlap geneElmo1
Upstream geneTcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471H06.T7 (MSMg01no471_h06.b1)MSMg01-471H06.TJ (MSMg01no471_h06.g1)
ACCAG554217AG554218
length7521,356
length of high quality
(start - end)		628 (50 - 677)---
definitionCHROMAT_FILE: MSMg01no471_h06.b1 PHD_FILE: MSMg01no471_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:42 2005CHROMAT_FILE: MSMg01no471_h06.g1 PHD_FILE: MSMg01no471_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCC
GCGGAATTCAATATTTTCCAATTTGCTTAATTATTTAAACTTTGGGTTAT
TATTATTTTTAAAATAAGTATCTGTGAATGTCTAAACATGGAGATTACAT
TGAATGGACCTATGTGTAGGTGACATTTATATCTTAACTATGTGCCACGT
GCCCTTCCAAGGGTCTTGCCTCATGGTCTCAATTTTTATGATGCTACTGT
GTGCAAGGGATAGCTTTTAGTATGGTTTTTGGAAGGGTAAACACACCGAG
AAGAGAGGCAATGTACCCATCTTTATAAAGCTGGGGGCTGCAGAGATAGG
GTGCTGCCCCTGGATATTTTCCTGAAGCTGCTCAGAAGATCCAGACAGAG
AGAACGTTGGGGAACTAGGAGGTAACTACAATCCCAAGTGACTTTCAGGG
GTCTCTTTCCTTAATCTCATCCCCTGGACATGCTTTTCTGTCCAGAAACT
ATTCTGAGCAAATGTACTTCTGACGGAGTTGAGAGTTTTACTATAGAGAT
ACTTGTGGTACATAGGGCATCTGGGATCCTAAACTGTGGCTGGCAGATTT
AGAGAACTGCGGCCCATAGTACCCTGTCACTGACAGGTGTGTGGGTACAT
CAGCTGGGCTGCTGCCAGCTGCAGCAGGCAGGTGGCAAGGCAGAAACGTG
GACAGCAACAGATTGGAAAGCTCGAANGTGAACAAGGGGGCTGGGTAAAG
TC

GCACAGCACTACCACACCTATTGATCGCACATGCCTCGCCGTTGCGCGAA
TACCCCGCAGATTGTTTTGCCTCGATCTCACCCCTCTATGATGACTCCNG
TTTTTATTTTCATTGATACTATGAATATAATCGCCGCTATGTCTGTCGAG
TTAGATGGTTAGATGCGCGTAGTACACGCCGCACGCGCTGCGCGGAGATG
CCGACTAGCTACACGAAGACATATGTAAATAAAGATACAGATTATAGCAA
GAGTAATCAGAGCATTTGGTGGCGTCGAGAACCCGTGCCTCAGTCAGCAG
TATATGTTCATGCTTCTCATATATACGACCATTAACATGTATGTGCCGCT
CTGTATTGACGTTGTGTGAATGATCGTTTTACCATATTCGTTCCGTGCGG
ANTATCATCGTATACGGCGACCGAGCGTCGACGCGAGTGACTGCGAGAGT
GGCGTGCGCTGACGCGCGGCGGGCTGCAACTGACGACACTCATAGCGTAG
ATGTATTTGTGCACCATCCAACCGTGCTGCTTATTATATGTGTGTTCATT
ACTTTATCGACACATGACCCGCGTTGAGTAGGAGACAGGTAACGAGGATC
GTATTATATATACTAATCACGCGCGCCGGAAATTGCTGTATGCTGTTATC
ACGACGACAACGCCTATATCGCGGATGTCAGGAGTGGACAGACGTATATG
CATGAGGCGTGTGACCAGCTGCGCGCCCGCTATATAATGTTCTCGTTCTT
GCGAGGGCGCCGGTTACTCTAGTTATCGTGGCGCGGCGCGCGATCACATG
CATAGCCGAGCGAGATCGCGGTAGGTACGAGTTGAGACTCGTATATATAT
GCGTCGGCTCCGTGTATCTCGCAGTTTATTGACGAGCCTGCGCATAATGG
TTTATATATATAGAAGCGGCTGATCGCGCGATTATAATATGCTGTATCGC
GCGTGTCGCCGCTGTTTTCGCGGCCGTCACGAGCTTTTGTCGCTACGCTG
TTATAGCTGCAAGCGTCCACCAGCACGACGCTTACCGCGTAGTGCACAAT
CGGTGGATGTCGCGAGAGGTACTCTGTATTTGAGNTAGCTTCTTATTAGG
CGATCACGCCAGTACGCCTCCGCGCGCCACGTATCCCATTACCAGTAGTA
TGACAGGTACGTGTCGCGCGGCGTGTCGTCGCGACGACGAGTTATTGTTA
TGCACATACATGTGTGTCTACTTATATCTCGCACATCTACTATAGCCATC
ATTAATATCACTATATTCCACCTGTACATTAGACGACGGAGTTTATAAAC
ATCACACCGATTTCACCGGCTGTCACCGCGTGTGTACCTTGTGTATTATA
TCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_h06.b1 MSMg01no471_h06.b1 CHROMAT_FILE:
MSMg01no471_h06.b1 PHD_FILE: MSMg01no471_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:42 2005
         (628 letters)



>mm_chr13_20291684_20292711
          Length = 1028

 Score = 1129 bits (584), Expect = 0.0
 Identities = 602/608 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  aatttgcttaattatttaaactttgggttattattatttttaaaataagtatctgtgaat 80
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 221 aatttgcttaattttttaaactatgggttattattatttttaaaataagtatctgtgaat 280

                                                                       
Query: 81  gtctaaacatggagattacattgaatggacctatgtgtaggtgacatttatatcttaact 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtctaaacatggagattacattgaatggacctatgtgtaggtgacatttatatcttaact 340

                                                                       
Query: 141 atgtgccacgtgcccttccaagggtcttgcctcatggtctcaatttttatgatgctactg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atgtgccacgtgcccttccaagggtcttgcctcatggtctcaatttttatgatgctactg 400

                                                                       
Query: 201 tgtgcaagggatagcttttagtatggtttttggaagggtaaacacaccgagaagagaggc 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtgcaagggatagcttttagtatggtttttggaagggtaaacacaccgagaagagaggc 460

                                                                       
Query: 261 aatgtacccatctttataaagctgggggctgcagagatagggtgctgcccctggatattt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aatgtacccatctttataaagctgggggctgcagagatagggtgctgcccctggatattt 520

                                                                       
Query: 321 tcctgaagctgctcagaagatccagacagagagaacgttggggaactaggaggtaactac 380
           | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttctgaagctgctcagaaggtccagacagagagaacgttggggaactaggaggtaactac 580

                                                                       
Query: 381 aatcccaagtgactttcaggggtctctttccttaatctcatcccctggacatgcttttct 440
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 581 aatcccaagtgactttcaggggtctcttcccttaatctcatcccctgggcatgcttttct 640

                                                                       
Query: 441 gtccagaaactattctgagcaaatgtacttctgacggagttgagagttttactatagaga 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gtccagaaactattctgagcaaatgtacttctgacggagttgagagttttactatagaga 700

                                                                       
Query: 501 tacttgtggtacatagggcatctgggatcctaaactgtggctggcagatttagagaactg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tacttgtggtacatagggcatctgggatcctaaactgtggctggcagatttagagaactg 760

                                                                       
Query: 561 cggcccatagtaccctgtcactgacaggtgtgtgggtacatcagctgggctgctgccagc 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 cggcccatagtaccctgtcactgacaggtgtgtgggtacatcagctgggctgctgccagc 820

                   
Query: 621 tgcagcag 628
           ||||||||
Sbjct: 821 tgcagcag 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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