BAC Information

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BAC

Clone NameMSMg01-472H08
Chromosome13 (Build37)
Map Location 117,388,980 - 117,389,226
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
Downstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472H08.T7 (MSMg01no472_h08.b1)MSMg01-472H08.TJ (MSMg01no472_h08.g1)
ACCAG554987AG554988
length748762
length of high quality
(start - end)
249 (70 - 318)512 (78 - 589)
definitionCHROMAT_FILE: MSMg01no472_h08.b1 PHD_FILE: MSMg01no472_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:06 2005CHROMAT_FILE: MSMg01no472_h08.g1 PHD_FILE: MSMg01no472_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAGAGXXXXXXXX
XXXXXXXXXXXXXXXXAAGTTCTCTCCAGAGCTACTCTGGAGTGAGGAGT
GCACGGAAAAACAAGGTTATGGATGGAAGAATGATGTCATCTGTAGCAGT
GAAGGGGATGTGGTCCAGGATGGCGAAGACATGGCTATCATTCAGAGACC
AGATACAAGGCTCCTTTTATTCCCCATTTTAAAGATGAGTTCATTTGCCC
CTCTAGGGTAATTTTTTTCCAATGGGATAAATACTGAAATGATAGGTAAT
AGAGATTAGAGACCCTTTTTTTTACTTAGGAATTATCATATAATTGCTAG
AAGTGATATGAGTGGCCATTTTAGAAAAGTAGAATATTGTGATAGAAAAG
TGCCCATTACTCAGAACCAAAAACATTGATGTTACAAATTCAGGCTCTGA
CTGAATTTAGGAAGTTCTGTACAGTGAAGAAAAGGGCTTTCTCTTCAATC
AGACCTTTTCTTTGGTGACAATGGAGATGCTGTAGCTGTAACTCTGCTTC
CTATGTTATGATGATGAACATGCCAGGTTCTGCATGGGCGTGCCTTGTGA
GGGACAATGGGGTGTATGCCTGCTCCTTACCATCTCTTTCCCTTCTGAAG
GTGGTTTTTGAGGGGTACGCGGGAGGGCCTCAAACCTTTACCGTTACCCT
ACCCCCCGCTTTTCCGGCTCACCTCGTTTAAAATTTTCAACTCTCTTG
NCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACA
GTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAGTTCTGGTTCCG
GAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCAGGTTTTCT
TGTCCCAGGTCTTCTCGTCCCGGGTCTTCTTGTCCCGGGTCTTCTCGTCC
CATGTCTTCTCGTCCCAGGTCTTCTCGTCCCGTCCCGAGTTTTCGGCACC
AACTCTTACACGCTTTCTCTTGTTCGGCCAGGAAGAACGCAGCAAACCGG
AATCTTCTGCAGCAAAGCTTTATTGCTTACATCTTCAGGTGCCAGAGAGC
AAGAGAGCAAGAGTGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAAGA
AAGCAAGAGAAAGAAAAAGCAAGAACAAGAGAGAGAAAAAGAACAAGAAC
AAGAAAGCAAGAGAAAGAAAGCTAGAGAGAGAAAAAGAATGGCAAAACCC
CGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGA
TTGGCTGCAGCCCATCAGCCCAGTTGTCTTCACGAGAAAGGTATAACACA
TGGCGGTTAATATTGCCCCTGCACGTGTGCAGATTATGTCTACTATTTTA
AAACCCAGCTGTCCGCGCCCTCTTGTTATGGGCAATTGGGAGGCGCGCCT
CCCTCTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_h08.b1 MSMg01no472_h08.b1 CHROMAT_FILE:
MSMg01no472_h08.b1 PHD_FILE: MSMg01no472_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:06 2005
         (249 letters)



>mm_chr13_117388778_117389429
          Length = 652

 Score =  439 bits (227), Expect = e-128
 Identities = 241/247 (97%), Gaps = 3/247 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   ctctccagagctactctggagtgaggagtgcacggaaaaacaaggttatggatggaagaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 ctctccagagctactctggagtgaggagtgcacggaaaaacaaggttatagatggaagaa 390

                                                                       
Query: 63  tgatgtcatctgtagcagtgaaggggatgtggtccaggatggcgaagacatggctatcat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgatgtcatctgtagcagtgaaggggatgtggtccaggatggcgaagacatggctatcat 330

                                                                       
Query: 123 tcagagaccagatacaaggctccttttattccccattttaaagatgagttcatttgcccc 182
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcagagaccagatacgaggctccttttattccccattttaaagatgagttcatttgcccc 270

                                                                       
Query: 183 tctagggtaattttttt---ccaatgggataaatactgaaatgataggtaatagagatta 239
           | |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtagggtaattttttttttccaatgggataaatactgaaatgataggtaatagagatta 210

                  
Query: 240 gagaccc 246
           |||||||
Sbjct: 209 gagaccc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 652
Length adjustment: 9
Effective length of query: 240
Effective length of database: 643
Effective search space:   154320
Effective search space used:   154320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)