BAC Information

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BAC

Clone NameMSMg01-472J23
Chromosome13 (Build37)
Map Location 48,776,609 - 48,777,043
singlet/doubletsinglet
Overlap genenone
Upstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1
Downstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472J23.T7 (MSMg01no472_j23.b1)MSMg01-472J23.TJ (MSMg01no472_j23.g1)
ACCAG555112AG555113
length777789
length of high quality
(start - end)
435 (73 - 507)324 (78 - 401)
definitionCHROMAT_FILE: MSMg01no472_j23.b1 PHD_FILE: MSMg01no472_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:19 2005CHROMAT_FILE: MSMg01no472_j23.g1 PHD_FILE: MSMg01no472_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGGATCC
GCGGAATTCCAAGAGTTTCCTAGTAACTGAGCGCTCTAAGTCAGCTTCCC
AGAAACGTTCAATCACGGATGGTTCCCTGGTTTTCTGACCTAAAATTCCA
TTTCACTGACAAGGACTCATCGCTAAGGAGGTAGACATGGATGCTGGTGG
TAAAGCAAGCTAAGGGGCTCCTGTGGCAAGTTACCATGGGGCATACCAGG
GCTTCTTTTCTAGAAGCCAGAGAACCTGAATTAAAGGAACCAGTGTCTGG
TCTCATGCCAGGATACCCAGGGGGTCTCTGAGCTGGTCAGGGGCAGGCAC
TGTTTGGAGTCCTGGCCACTTTTCCCTTACCCTTTGCAGTGATGACATCA
AGCCTTATCCTATGGCTCTTTGTGAAAAGTCTCATTATGCACTGTGTATT
TACCGTCTGTCTCTGTCAATCACAGAATGTGCCTGATGGAGGTTCTTCTA
GTCCTGAGCTCAAACTCAACAGGGTTGCTCTAAACTTTTGGAGGAAGAGA
GGCCTTTGTGTAACCCTGATGATGAACCTTCCCCAGCCCACTCCCGGAAC
CATTTTAAGGAATAAGTGGTTCTCTCCTTAAACTGTCCACTCATTGCTAT
TCTGTGTTGATGTAAACCCACCTCTATTTGCTGCGGTAAAATCCCCTCCT
ACCCTCGCTAATATAATCTTTGTCTTACGTTATTAGTATCTCTCCCTACT
CTCTTTTATTACCTTTTTGGACCGAGG
NGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTTTTCAGAGAGTGTAT
ACATGCTGGGGCTCTAAGAGATTGGTGGGTTGCTGACTGGTTGTTGGTCG
AGGTTTGTTAAGTAGGTGTGCACAAAGAAGAAACAAGAAAGTAAATATAA
CGATGGTGAAGCTCAGACTTGCCCCAAGGAACTCAACTCCTGTAATCAGC
AGGACGAACCCTAAGGATAACATCACCCCTCCCTGACCCCTGACTTTATT
CCGGGATCACTCTCCTTCCCCTTTTATCCTTTTTCTCTCTTAGCTAGTGT
TCCCAGGTAGGACAGGTAGAGAAAGGGGTGGAGAAGGGTGGGAAAAAAAA
AGAATCCTCTATGTAGCCAAAATTGAGCTACTACTGTTAACACTTGTTCT
GCCTGCTTTCTTACAGAGCCCAGTGCCACCTGTCCACGGTGTACATTATC
CATCATGGGCTGTGCCCCTCCATAACAATTACTATTTTTAATTTTTCCTA
CCTGTTCTTTTTTCTGCTTGTACCTATTATAATATTTTTTTTTTTTACCA
TACCCCCCCCTTCCTTTTTACTTTTATCTGTTTGTCTTTTTTCTTCTCTA
TTCCTTCTTTTAATAACTCTTTTTCTTATATTATTTCCTTGTTATTTTAT
TTAAACCTAAACTTCTCTTCGTTTTCGCCAATAAATATTTTCCTCTTAAT
TATTTTTCTTCTCTTTATTTTTTTTACTTTCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_j23.b1 MSMg01no472_j23.b1 CHROMAT_FILE:
MSMg01no472_j23.b1 PHD_FILE: MSMg01no472_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:19 2005
         (435 letters)



>mm_chr13_48776409_48777243
          Length = 835

 Score =  795 bits (411), Expect = 0.0
 Identities = 429/435 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaactgagcgctctaagtcagcttcccagaaacgttcaatcacggatggttccctggtt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaactgagagctctaagtcagcttcccagaaacgttcaatcacggatggttccctggtt 260

                                                                       
Query: 61  ttctgacctaaaattccatttcactgacaaggactcatcgctaaggaggtagacatggat 120
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttctgacctgaaattccatttcactgacaaggactcatcactaaggaggtagacatggat 320

                                                                       
Query: 121 gctggtggtaaagcaagctaaggggctcctgtggcaagttaccatggggcataccagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggtggtaaagcaagctaaggggctcctgtggcaagttaccatggggcataccagggc 380

                                                                       
Query: 181 ttcttttctagaagccagagaacctgaattaaaggaaccagtgtctggtctcatgccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttttctagaagccagagaacctgaattaaaggaaccagtgtctggtctcatgccagg 440

                                                                       
Query: 241 atacccagggggtctctgagctggtcaggggcaggcactgtttggagtcctggccacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacccagggggtctctgagctggtcaggggcaggcactgtttggagtcctggccacttt 500

                                                                       
Query: 301 tcccttaccctttgcagtgatgacatcaagccttatcctatggctctttgtgaaaagtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccttaccctttgcagtgatgacatcaagccttatcctatggctctttgtgaaaagtct 560

                                                                       
Query: 361 cattatgcactgtgtatttaccgtctgtctctgtcaatcacagaatgtgcctgatggagg 420
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct: 561 cattatgcactgtgtatttaccgtctgtctctgccaatcacagaatgtacctgatcgagg 620

                          
Query: 421 ttcttctagtcctga 435
           |||||||||||||||
Sbjct: 621 ttcttctagtcctga 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)