BAC Information

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BAC

Clone NameMSMg01-473O21
Chromosome13 (Build37)
Map Location 64,660,426 - 64,854,751
singlet/doubletdoublet
Overlap genePpia-ps13_866.1, LOC238678, LOC631470, Cntnap3
Upstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473O21.T7 (MSMg01no473_o21.b1)MSMg01-473O21.TJ (MSMg01no473_o21.g1)
ACCAG556113AG556114
length764792
length of high quality
(start - end)		503 (51 - 553)427 (80 - 506)
definitionCHROMAT_FILE: MSMg01no473_o21.b1 PHD_FILE: MSMg01no473_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:12 2005CHROMAT_FILE: MSMg01no473_o21.g1 PHD_FILE: MSMg01no473_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,854,253 - 64,854,751)(64,660,426 - 64,660,852)
sequence
NNAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGCATGTTTGCATGTATGTGTGCACTTATGTGCACATGT
CTGCATGTGTGCTTGTATTCACAAGGAATGTTAATATACTATGAATCCAT
AAGACATAGCTTTAAGCATTATTGGTTCCTAAGTTAAGGTGAGATTATCC
TTCTTCAGAGAACTTGAAACCATCAAACTACTTGATGGAAGAAAAATACC
AACAAAGTGTGTGTGTTAGATTTCCATTACTGAAACAAATACCTTAGCTA
ATCACCTTATAGAGATAAGAGATTCAGGGTCATGAGGATGGCTCAAAAGG
TAAAGGTACTTGCCACCACTTTTAATGATCTGATTTCTAGCCCCAGAACA
CACAGGTAGGAGAAAACTGAGACCCACACATTATCCTTTGAACTCCAAAT
GTGCACCACAGGTCATGCCACCCCAACCTATACATCATACATACATACAT
ACATACATACATACATACATACATACATACATACATACATGATGTAGTAA
ACAAAATTTATAAGGGAGTCCCTTCCAGACCCGGAGCTTTGAATTTCAGT
CCACACATAGACCGACCCACTGTGGTAGGGCTTTTGAGGCCCTTATTTTT
TGCCCAACATGGTGGGAGCAAGAAGATCAGGAAATTTCTCCTCCAGTCAA
ATGTAAGTATATAAGTACCCCGGGGCCACCAACTTCTTTGATGCTTGCGC
CCAAAAATATAAAA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATTTCAGAATCAAAGTATT
TCTCTGGCAATGTTATTTGTATTTTGAGGAGGGCACCTCCTTCTTTTTCC
AGCCCCACTGCTTTTCAGTGCATCCCACGAACGGGGTTTTTATAGTGACC
TCTGTTTCTTCAAGCCTGAAACATTATTCTTTGATTTGGTATTGGAGTTA
ACTGAAAATAAGGCTCAAAATAATTGTTGTGCTTTTATAGATCTTTTTGT
CAACTCTTTTTTTGCCCTGAGGATTTTCTTTGTGACATTAATAGCATTAA
TTTTTTGTGGGGGCATATTTTGTCTATTTCTGTTGTGTATGTTCTGTTGT
TTCTGTCTTTCAGAAAATCCAAGGTTGTTGGCTTTAATTCTATTACATAA
CATAAATGGAAGTGTTGTGTTTACAGAAATTCTGCTCCCCCCTCTTTTTC
TCTTTATGTTTGTGATGCATGTGATATGTGGTTTGTGTTTGGNTTTTATA
TTGTTTGCCGTTNNTTTTATTNNTATTNTTTTTTTTTTTTTTTNCTCTTC
TCCTTTTTTCATTCCATTCTTTTTTGTTCTTCTGACTCTCTTCTTTTTTT
TTTCCCACCTACTTCCGTTTTCTTTTTTTGTTCGGTCTCCTGCTATGTCT
TCGTTTCCTTCTTTTCTTCCTCCTTACTTTCCTTTTTTAATCCTCGTGCA
TTCCTCTCTTTTTCTAACTGCTTACAATTTCTATACTATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_o21.b1 MSMg01no473_o21.b1 CHROMAT_FILE:
MSMg01no473_o21.b1 PHD_FILE: MSMg01no473_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:12 2005
         (503 letters)



>mm_chr13_64854206_64855108
          Length = 903

 Score =  942 bits (487), Expect = 0.0
 Identities = 496/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagcatgtttgcatgtatgtgtgcacttatgtgcacatgtctgcatgtgtgctt 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaattcaagcatgtgtgtatgtatgtgtgcacttatgtgcacatgtctgcatgtgtgctt 487

                                                                       
Query: 65  gtattcacaaggaatgttaatatactatgaatccataagacatagctttaagcattattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtattcacaaggaatgttaatatactatgaatccataagacatagctttaagcattattg 427

                                                                       
Query: 125 gttcctaagttaaggtgagattatccttcttcagagaacttgaaaccatcaaactacttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gttcctaagttaaggtgagattatccttcttcagagaacttgaaaccatcaaactacttg 367

                                                                       
Query: 185 atggaagaaaaataccaacaaagtgtgtgtgttagatttccattactgaaacaaatacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atggaagaaaaataccaacaaagtgtgtgtgttagatttccattactgaaacaaatacct 307

                                                                       
Query: 245 tagctaatcaccttatagagataagagattcagggtcatgaggatggctcaaaaggtaaa 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 306 tagctaatcaccttatagagataagagattcagggtcaggaggatggctcaaaaggtaaa 247

                                                                       
Query: 305 ggtacttgccaccacttttaatgatctgatttctagccccagaacacacaggtaggagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggtacttgccaccacttttaatgatctgatttctagccccagaacacacaggtaggagaa 187

                                                                       
Query: 365 aactgagacccacacattatcctttgaactccaaatgtgcaccacaggtcatgccacccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aactgagacccacacattatcctttgaactccaaatgtgcaccacaggtcatgccacccc 127

                                                                       
Query: 425 aacctatacatcatacatacatacatacatacatacatacatacatacatacatacatac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aacctatacatcatacatacatacatacatacatacatacatacatacatacatacatac 67

                              
Query: 485 atacatgatgtagtaaaca 503
           |||||||||||||||||||
Sbjct: 66  atacatgatgtagtaaaca 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no473_o21.g1 MSMg01no473_o21.g1 CHROMAT_FILE:
MSMg01no473_o21.g1 PHD_FILE: MSMg01no473_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:12 2005
         (427 letters)



>mm_chr13_64660226_64661052
          Length = 827

 Score =  826 bits (427), Expect = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatttcagaatcaaagtatttctctggcaatgttatttgtattttgaggagggcacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttcagaatcaaagtatttctctggcaatgttatttgtattttgaggagggcacctc 260

                                                                       
Query: 61  cttctttttccagccccactgcttttcagtgcatcccacgaacggggtttttatagtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctttttccagccccactgcttttcagtgcatcccacgaacggggtttttatagtgac 320

                                                                       
Query: 121 ctctgtttcttcaagcctgaaacattattctttgatttggtattggagttaactgaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgtttcttcaagcctgaaacattattctttgatttggtattggagttaactgaaaat 380

                                                                       
Query: 181 aaggctcaaaataattgttgtgcttttatagatctttttgtcaactctttttttgccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggctcaaaataattgttgtgcttttatagatctttttgtcaactctttttttgccctg 440

                                                                       
Query: 241 aggattttctttgtgacattaatagcattaattttttgtgggggcatattttgtctattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggattttctttgtgacattaatagcattaattttttgtgggggcatattttgtctattt 500

                                                                       
Query: 301 ctgttgtgtatgttctgttgtttctgtctttcagaaaatccaaggttgttggctttaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgttgtgtatgttctgttgtttctgtctttcagaaaatccaaggttgttggctttaatt 560

                                                                       
Query: 361 ctattacataacataaatggaagtgttgtgtttacagaaattctgctcccccctcttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctattacataacataaatggaagtgttgtgtttacagaaattctgctcccccctcttttt 620

                  
Query: 421 ctcttta 427
           |||||||
Sbjct: 621 ctcttta 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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