BAC Information

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BAC

Clone NameMSMg01-474C21
Chromosome13 (Build37)
Map Location 112,704,024 - 112,704,345
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
Downstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474C21.T7 (MSMg01no474_c21.b1)MSMg01-474C21.TJ (MSMg01no474_c21.g1)
ACCAG556302AG556303
length713732
length of high quality
(start - end)
322 (329 - 650)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no474_c21.b1 PHD_FILE: MSMg01no474_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:32 2005CHROMAT_FILE: MSMg01no474_c21.g1 PHD_FILE: MSMg01no474_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCG
GAATTCCCTGGGTTCCCATGCCCCACCCCTTGGAAAGCTAACAAACTCCT
TGGTTGGATCAGTTCTCCTGGTGAGACCGTTCCTGGTTTTCCTCACAGCA
GAGAGAAATCTCTATAGTCTGCTTCCAACACATATAGAGCTATTCTCTTT
CAGGACAGAGGTTGAATATTTAAACCCCACCCCACCCCCCGGCCATCTCA
CAATTCCAAGGAGAGGCCAGCTTTTTGTGCTCCAAAAGCACACGATGGAG
CCATCTAAGAACAGTGTGTATCTTATGATCAGCAGGCCCAAGGACTAGAG
AAGGCAGAGGAGAGGGTGACTGCCCACCAGCAGAAATGTCCCCACCCGTG
CCGCTGTGGGGTAGGCTATGCTCATTCTCTGAATATCGATCTGTTGTCAG
CTGCACTCCCTGGCTAACCAGTACTGGAAGGCTCTTTCCATTTTGTGGAG
ATACCAATTCACAGGATATTCTTAAAACTAGAAGGGATCACAAGAATCAT
CTCTCCAACTGTCTCATCTTACAGATAAAGAAACTAAGCTTGGGATAAAT
AAATACATCCAGGGGTAGGAGGAAGATCATCAGAGCTGGACAGAAAGCTG
CTCCTCTCTGTACTTTCCCCATACATACATCACACTATTCTGTGTCTTCA
CTGTGGTTAATTA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGAACTTTTCAGAGGCCCTGAGAG
GCATGGTGTATGGACATCAGTGGCTTAGGGAAGTTGGTTGTGGTTAGTGG
CTGTGGTCAAAGAAGAAATAATAGGAAGACATTAAATTCAGGGGTCTCTC
TGTCCTTCCGTCTCTTTTCCCTCTATCGTTGTTTCTCTCCGATCTAGTCT
TAGGTGGTGAAACTGGGGTTTGAGGGAGGGGTAAAGAGTAGGAAAAAGGA
GAACCCACAAAGAAGCCAAGATTTTTTACAAAAATGAGAAAAGTGGTTTC
TTGCTAGTTTTCATGCAAATTAGCAAAAGCCACTTTGTCCTTCGGCGACA
TTACTGCCCTCTGCCAGGACAAAATTATAACAACCACACACATCTAGTAA
AACTGTAGCATGCATGGTGCTCATAGAACTGTGTAGAACACAGGAGGTGT
AGCAGCCTTAATTGTCCACTGAAGGGTGGCAGTAGTTCTTAGATACTCTG
AGGGGGAACGAGGTGGAGAGTCACTGTCTTCAGCAAGGTGCAGGGGTGGG
CACAGAGGGTCCACAGAGTGAGAGGAAGGGGAGAAAAGCAGACTTTTGTT
TTTGGCATAAGTGGAGAATAAAGGTTTAGGTGGAGGGAGCCCCTTGTATC
AAAGTGGGGGGGACTATTTCGAAATTGAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_c21.b1 MSMg01no474_c21.b1 CHROMAT_FILE:
MSMg01no474_c21.b1 PHD_FILE: MSMg01no474_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:32 2005
         (322 letters)



>mm_chr13_112703970_112704691
          Length = 722

 Score =  547 bits (283), Expect = e-160
 Identities = 313/323 (96%), Gaps = 2/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcaggcccaaggactagagaaggcagaggagagggtgactgcccaccagcagaaatg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcagcaggtccaaggactagagaaggcagaggagagggtgactgcccaccagcagaaatg 317

                                                                       
Query: 61  tccccacccgtgccgctgtggggtaggctatgctcattctctgaatatcgatctgttgtc 120
           | ||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct: 316 ttcccacccgtgccgctgtggggtaggctatgctcgttctctgaacattgatctgttgtc 257

                                                                       
Query: 121 agctgcactccctggctaaccagtactggaaggctctttccattttgtggagataccaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 256 agctgcactccctggctaaccagtactggaaggctctttccattttgtggagatactaat 197

                                                                       
Query: 181 tcacaggatattcttaaaactagaagggatcacaagaatcatctctccaactgtctcatc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 196 tcacaggatattcttaaaactagaaggggtcacaagaatcatctctccaactgtctcatc 137

                                                                       
Query: 241 ttacagataaagaaactaagcttgggataaat-aaatacatccaggggtaggaggaagat 299
           ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct: 136 ttacagataaagaaactaagcttggaat-aataaaatacatccaggggtaggaggaagat 78

                                  
Query: 300 catcagagctggacagaaagctg 322
           |||||||||||||||||||||||
Sbjct: 77  catcagagctggacagaaagctg 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)