BAC Information

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BAC

Clone NameMSMg01-474K22
Chromosome13 (Build37)
Map Location 55,634,205 - 55,634,572
singlet/doubletsinglet
Overlap geneDdx41
Upstream gene4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3
Downstream geneBC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474K22.T7 (MSMg01no474_k22.b1)MSMg01-474K22.TJ (MSMg01no474_k22.g1)
ACCAG556687AG556688
length793784
length of high quality
(start - end)
394 (75 - 468)---
definitionCHROMAT_FILE: MSMg01no474_k22.b1 PHD_FILE: MSMg01no474_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:13 2005CHROMAT_FILE: MSMg01no474_k22.g1 PHD_FILE: MSMg01no474_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGGCATGTTCCAGCTACACAGAAGAAACCCTGGTCTCAA
AAAAAAAAAAAAAAAAAAGGACCACACAGGGGCATGCTGTCAGGGGATAC
CGAACAGCTGAGCCACAGAGCCTGAGAAGCAGAGGGCATGCAGTGCAGGG
ACCCTGCAGCTCAGCATGCAGTACATGAGTGTATTTACATGCAGGGGTCG
GGCACCTTGAAGTAGGAGAAGATGGTACGAATGTCACCCTCAAAGCCCAT
GTCAATCATGCGGTCAGCTTCATCCAGGGCTATGTATCGGCAGATGTCTA
GGCTGACCATTTTCTTCTGCAGCAAATCCATGAGGCGTCCAGGTGTGGCT
ACCATCATGTGCACACCACTGAGAACAAAGAAACCCTAAGTTTTGGGTTC
CTGGGTATCTCTATGAGCTACCAAGAGGCTGTACACTGCCTTCTGCTTTC
GCTGTCTCCTCCCCTGCCTCTCAGTAATTCTCTCAGGTTATCTTCTGTAT
AAAAAAAGCCGTTTATTATTTTTGGCCTAACCTTTTCCTGTGTTACAATT
TACTCTTTGCCTGCCCTCCCCCTCTAAAAGAGTTTTTGTGTTTCCCTTAA
GGGGTTTTCCCCTGTTTTTTCGTTCTCCTTTTTTTGTGCTCCTTTTTTTC
TTCATTTTTTCTTTATTATGTCCCCTGTTTTTTCTCTATGCCTTTTCGCT
CCCGCTTCTGTCTTTCCCTTCCTCTATAATGGCGGATGTCTTN
ACANTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCGCCCCCCCAGAACTGGCCTGGGCTTCAGAAT
GAGACCTTCTCTCAAAAATCAGACCCCCGNAAAACCAACGACAAAACAGT
CCACCCCGNCGCCACTTCAACACATCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCTTTTCCCCCCCTC
CCCCCCCCCCCTTTCCCCCCCCNCCNCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCNCCCCCCCCCCCCCCCTCCTTTTCTTCCCCCCCCCCCNCCCCC
CCCCCCCCCCCCTTCTCCCCCCCCCCCCCCCCTCTCTTCCTCCCCCCCCC
CCCTCCTCCCCCCCCCCTCCCCCCCCCCCCCCCCCNCCCTCACCCCCCCC
CTCCACCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTCCCCCCCCTCCTCCCC
CCTCCCCCCCCCCCCCCACCCCCCCCCCCTCCCCCCCCCCCCCTCCCCCT
CCCCCCCCCTCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTCCCCCCC
TCCCCCCCCCCCCCCCCCCCCTCCTCCCCCCCCCTCCCTCCCCTCCCCCC
TCTCCCCCCCCCCCTCCTCCTCCTTCCCCCCCCCACTCCCCCTCACGCCC
CCCCCTCCCTCCCCCCCCTTCCCCCCCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_k22.b1 MSMg01no474_k22.b1 CHROMAT_FILE:
MSMg01no474_k22.b1 PHD_FILE: MSMg01no474_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:13 2005
         (394 letters)



>mm_chr13_55633980_55634772
          Length = 793

 Score =  685 bits (354), Expect = 0.0
 Identities = 366/370 (98%), Gaps = 2/370 (0%)
 Strand = Plus / Plus

                                                                       
Query: 25  aaaaaaaaaaaaaaaaaaaaggaccacacaggggcatgctgtcaggggataccgaacagc 84
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 226 aaaaaaaaaaaaaaaaaaaa-gaccacacagggg-atgctgtcaggggataccgaacagc 283

                                                                       
Query: 85  tgagccacagagcctgagaagcagagggcatgcagtgcagggaccctgcagctcagcatg 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgagccacagagcctgagaagcagagggcatgcagtgcagggaccctgcagctcagcatg 343

                                                                       
Query: 145 cagtacatgagtgtatttacatgcaggggtcgggcaccttgaagtaggagaagatggtac 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cagtacatgagtgtatttacatgcaggggtcgggcaccttgaagtaggagaagatggtac 403

                                                                       
Query: 205 gaatgtcaccctcaaagcccatgtcaatcatgcggtcagcttcatccagggctatgtatc 264
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 404 gaatgtcaccctcaaagcccatgtcaatcatgcggtcagcttcatccagggctaggtagc 463

                                                                       
Query: 265 ggcagatgtctaggctgaccattttcttctgcagcaaatccatgaggcgtccaggtgtgg 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggcagatgtctaggctgaccattttcttctgcagcaaatccatgaggcgtccaggtgtgg 523

                                                                       
Query: 325 ctaccatcatgtgcacaccactgagaacaaagaaaccctaagttttgggttcctgggtat 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctaccatcatgtgcacaccactgagaacaaagaaaccctaagttttgggttcctgggtat 583

                     
Query: 385 ctctatgagc 394
           ||||||||||
Sbjct: 584 ctctatgagc 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 793
Length adjustment: 9
Effective length of query: 385
Effective length of database: 784
Effective search space:   301840
Effective search space used:   301840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)