Query= MSMg01no475_a01.b1 MSMg01no475_a01.b1 CHROMAT_FILE:
MSMg01no475_a01.b1 PHD_FILE: MSMg01no475_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:38 2005
(496 letters)
>mm_chr13_117587807_117588702
Length = 896
Score = 907 bits (469), Expect = 0.0
Identities = 489/499 (97%), Gaps = 7/499 (1%)
Strand = Plus / Plus
Query: 5 gaattccatattcttt-cacaatattttaatcagctaaagcttttgctgggtgtgagcat 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattccatattctttatacaatattttaatcagctaaagcttttgctgggtgtgagcat 257
Query: 64 ttccagtacttgagatacagagacagaggtattattacttctacaggttcaaggtcagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttccagtacttgagatacagagacagaggtattattacttctacaggttcaaggtcagcc 317
Query: 124 tgggctaaacagtaaattccaggctatccttggcaacgtagaaagatcctgtcataatgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgggctaaacagtaaattccaggctatccttggcaacgtagaaagatcctgtcataatgc 377
Query: 184 aaccaaacc------aaaaaaaaaaaaaatcttaaaatggctctcttttccatcagcccc 237
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaccaaaccaaaaaaaaaaaaaaaaaaaatcttaaaatggctctcttttccatcagcccc 437
Query: 238 acttctatattctgaagcactgtggattccacaggtacccattttattctcagcatcagt 297
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 438 acttctatattctgaagcactgtggattccacaggtacccatcttattctcagcatcagt 497
Query: 298 gttcacaggaagatgtctaacgtgtcctgttacagtgtaaatccccagaaggaggaaacc 357
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 498 gttcacaggaagatgtctaacgtgtcctgttacagcgtaaatccccagaaggaggaaacc 557
Query: 358 aaatcttctatggttttcatttcccttttgtgcttacgctaaaacttgcccccttgcaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaatcttctatggttttcatttcccttttgtgcttacgctaaaacttgcccccttgcaat 617
Query: 418 taagaaattaatatttgcgtacctgtgaaatgttaaatgaatgactatacaagtagattt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taagaaattaatatttgcgtacctgtgaaatgttaaatgaatgactatacaagtagattt 677
Query: 478 actatgattaagaaaatca 496
|||||||||||||||||||
Sbjct: 678 actatgattaagaaaatca 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_a01.g1 MSMg01no475_a01.g1 CHROMAT_FILE:
MSMg01no475_a01.g1 PHD_FILE: MSMg01no475_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:38 2005
(523 letters)
>mm_chr13_117760757_117761679
Length = 923
Score = 949 bits (491), Expect = 0.0
Identities = 515/525 (98%), Gaps = 5/525 (0%)
Strand = Plus / Minus
Query: 1 agtataggtatttggtagtacatacttgcatcacaacactcaagaggcagagagaggcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agtataggtatttggtagtacatacttgcatcacaacactcaagaggcagagagaggcgg 498
Query: 61 atcatgtgattgaagttactctagggcagcctgtttcaaaagacataacccaacagaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atcatgtgattgaagttactctagggcagcctgtttcaaaagacataacccaacagaaac 438
Query: 121 actcaaacggaagagaataacttttctcaggtctggtctcgcatgataacttccttaatc 180
|||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct: 437 actcaaacggaagagaataactgttctcaggtctggtcttgcattataacttccttaatc 378
Query: 181 attctgggttaaagattaagtacttcactggctcctcatttacacattctattttcagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attctgggttaaagattaagtacttcactggctcctcatttacacattctattttcagct 318
Query: 241 atttctttttttagtttatgtttatgggtacgaatgctttacctgcctgtggcctgttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atttctttttttagtttatgtttatgggtacgaatgctttacctgcctgtggcctgttgc 258
Query: 301 ccaaggaggcctaaagaaggggtttggatgccttgggactggagttacaggcagtcgtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccaaggaggcctaaagaaggggtttggatgccttgggactggagttacaggcagtcgtga 198
Query: 361 gctgcctcatgagggctacgagtcaaaccctggaagctccagaagagcagccagtgcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gctgcctcatgagggctacgagtcaaaccctggaagctccagaagagcagccagtgcttt 138
Query: 421 tagccactgagccagctctccagcactattgttttcagcattttttttttacaacaggat 480
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 137 tagccactgagccagctctccagcactgttgttttcagcattttttt---acaacaggat 81
Query: 481 ttatttgtatgtctatttgtttgttaatttacatgc--atgtgtg 523
|||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 80 ttatttgtatgtttatttgtttgttaatttacatgcgcatgtgtg 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
