BAC Information

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BAC

Clone NameMSMg01-475C02
Chromosome13 (Build37)
Map Location 37,241,408 - 37,241,752
singlet/doubletsinglet
Overlap genenone
Upstream geneFars2, LOC100041590, LOC666758, Nrn1, F13a1
Downstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475C02.T7 (MSMg01no475_c02.b1)MSMg01-475C02.TJ (MSMg01no475_c02.g1)
ACCAG557029AG557030
length787739
length of high quality
(start - end)
345 (77 - 421)440 (79 - 518)
definitionCHROMAT_FILE: MSMg01no475_c02.b1 PHD_FILE: MSMg01no475_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:48 2005CHROMAT_FILE: MSMg01no475_c02.g1 PHD_FILE: MSMg01no475_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAT
CCGCGGAATTCAAGCCTGGTATCCTGTCCCTTGTCTATAAGCCCAAGACT
AAAAAGGTGGGGGTAGAAGGATCAGGAGTTGAAGGCCAGCCTCAGCCACA
TAGTGACTTCAAGCCAGGCTGAGCTGCACAAGACTCTGTGTCAAAAATGA
AACAAGGAAAAAAGAAGGAGGCTGGCTTTGTTTAATGCTGCACATCTGGA
ATCTCATCGTATGACAAATGAAGGGAGAAGGGCTGCAAGTTTCAAGATAA
CATGGATCGTACAGTGGGTTTTATGTTGTCCTGATTTACATAGCCAGAAC
CTATGGTTTTGTTGTTTGCCTGCTGTTTGTTTGGTTTTTTGTAATGAGTG
GGAGGAAAGAATTGCCTAGCAATATACAAAGAGAACAACTAAGTCACAAA
AAGTGATAATGCCATAAAGAAATTTCACTTTGAAAAGCAGCGGTCTGAGT
TCTAACGGAAATACCTTGACCTAACGACGTGGCCGCCACCCCTCTATAAG
GTTTTTCCCTACACGTTTGAGTACCAAATGCTCCCGCCCTTTTCGAATCA
TCTTACGCCCCCTTCTCTCCTCGATCTATTATCCCCCCCTCTCCTCTTTT
TTTTCCTCCAACTTCAACTTTTTAAATATCCCCCGCCTTTTTCTTCCTCA
CTTATCTATACCCTCCCACCCCTTCTTCCTGACCTAACTCCATTCACTTA
CCCCACCCAATACTCCCCCGCGTCTTCTCCTCTTTAG
TTTTTGAAGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCCTGTGGGAGAAAGTCAG
TCAATTTCCAACAGGTTTTAAATCCAAGTAGTAGAACTAGAGGTAAGGGC
AGGTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAAACA
AAAGATTGTAAAACTTGGTGTGATGGTTAGTCTTAATGCCAACTTGCCAT
TACTTAGAATCACCCAGGGGAAAAGTCTATTGAGGAATAATCTAGATCAT
GCTAACCTGTGGCTTTGTCTTGGAGAGTTGTACTAGCTAATTTTAATTTT
ATGTCAACTTGACACAAGCTAGAGTCACTGGAGAGGAGGGAGCCTTAACT
GAGAAAATGCCACCTTAAGATGATTCTATAGGCAGGATGTAGAGCATTTT
TTAAATTAGCAACTGATGAGGAAGGGTCCAGACCATTGTGAGTAGGACCA
CGAGGGGTAGGTGGTCTTGGGTTCTGCATGGAAGTCCGCTGACACAGCAC
TGACGAGCAGTCAACCCCCTAGTTTAATGTCTTCATGGTTTTTTCATTAG
CCCCTCGCTTCTATTTCTTGTTCGTTGGACCTCCCTCTTTCGACTCCCTT
GCTGTTTCCCCCCGCTACCGTTTTTCCCCCCTCCTTTATTTTTCTTCCCC
CTTCCTTTTTTTTGCTCTCCCTTTTTTTTCCTCATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_c02.b1 MSMg01no475_c02.b1 CHROMAT_FILE:
MSMg01no475_c02.b1 PHD_FILE: MSMg01no475_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:48 2005
         (345 letters)



>mm_chr13_37241208_37241952
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccttgtctataagcccaagactaaaaaggtgggggtagaaggatcaggagttgaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccttgtctataagcccaagactaaaaaggtgggggtagaaggatcaggagttgaaggc 260

                                                                       
Query: 61  cagcctcagccacatagtgacttcaagccaggctgagctgcacaagactctgtgtcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcctcagccacatagtgacttcaagccaggctgagctgcacaagactctgtgtcaaaa 320

                                                                       
Query: 121 atgaaacaaggaaaaaagaaggaggctggctttgtttaatgctgcacatctggaatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaacaaggaaaaaagaaggaggctggctttgtttaatgctgcacatctggaatctca 380

                                                                       
Query: 181 tcgtatgacaaatgaagggagaagggctgcaagtttcaagataacatggatcgtacagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgtatgacaaatgaagggagaagggctgcaagtttcaagataacatggatcgtacagtg 440

                                                                       
Query: 241 ggttttatgttgtcctgatttacatagccagaacctatggttttgttgtttgcctgctgt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttttatgttgtcctgagttacatagccagaacctatggttttgttgtttgcctgctgt 500

                                                        
Query: 301 ttgtttggttttttgtaatgagtgggaggaaagaattgcctagca 345
           ||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ttgtttgattttttgtaatgagtaggaggaaagaattgcctagca 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)