Query= MSMg01no475_j17.b1 MSMg01no475_j17.b1 CHROMAT_FILE:
MSMg01no475_j17.b1 PHD_FILE: MSMg01no475_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:27 2005
(436 letters)
>mm_chr13_25870989_25871825
Length = 837
Score = 806 bits (417), Expect = 0.0
Identities = 432/437 (98%), Gaps = 1/437 (0%)
Strand = Plus / Plus
Query: 1 taaatggtatagatcaatggcttgcaaatggtttattttttttctcccttacttaaaaga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 taaatggtatagatcaatggcttgcaaatggtttattttctttctcccttacttaaaaga 260
Query: 61 gtagcagggtataaaattacaggacaaatatttatttgttcacttgtttttctcttagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagcagggtataaaattacaggacaaatatttatttgttcacttgtttttctcttagtt 320
Query: 121 ctaaactattgttttat-tttcctttcctctttttttgagtaatttcagggaaagaatta 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaactattgttttatgtttcctttcctctttttttgagtaatttcagggaaagaatta 380
Query: 180 gacataattattactctttctaaagtatagatggcttatatagttttctctccaattttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacataattattactctttctaaagtatagatggcttatatagttttctctccaattttt 440
Query: 240 tatctttgcttttctattgtttaaaagaagcatgtgtgtagagttagatgcttttgctta 299
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctttgcttttctatagtttaaaagaagcatgtgtgtagagttagatgcttttgcttg 500
Query: 300 acttctcaagcgttgtttggtctttgacatcacatttggatgaattctaaatattttgtc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttctcaagcgttgtttggtctttgacatcacatttggatgaattctaaatattttgtc 560
Query: 360 ctttttaaaattaggacatttctcatatgttttaagatatattttgggaatacataagct 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ctttttaaaattaggacatttctcatatgttttaagatatattttggtaatacataagct 620
Query: 420 gatattttctagatttg 436
|||||||||||||||||
Sbjct: 621 gatattttctagatttg 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space: 353556
Effective search space used: 353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_j17.g1 MSMg01no475_j17.g1 CHROMAT_FILE:
MSMg01no475_j17.g1 PHD_FILE: MSMg01no475_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:27 2005
(394 letters)
>mm_chr13_25998135_25998931
Length = 797
Score = 683 bits (353), Expect = 0.0
Identities = 385/397 (96%), Gaps = 3/397 (0%)
Strand = Plus / Minus
Query: 1 caaaagaactgttaaaagaaataggaggaaatctaagtactttaactatgcttcattttc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 caaaagaactgctaaaagaaataggaggaaatctaagtactttaactatgcttcattttc 738
Query: 61 atagattggaagataatttttaagatgttcattctttatgcttcattcaaccatgcatac 120
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 737 atagattggaagataatttttaagatgttcattctttacgcttgattcaaccatgcatac 678
Query: 121 actaaactggaaggaaaaagagattagcccaggcctgaattagaaatgacaaacagattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 actaaactggaaggaaaaagagattagcccaggcctgaattagaaatgacaaacagattt 618
Query: 181 ttgaagcactccatacttttctttgtcaaccgggttataatctcccattcatttctgtaa 240
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 617 ttgaagcattccatacttttctttgtcaacctggttataatatcccattcatttctgtaa 558
Query: 241 tattattttcaagaaaattgtggtcacatctttctagattccagctctgtttacgtatca 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatcattttcaagaaaattgtggtcacatctttctagattccagctctgtttacgtatca 498
Query: 301 gaaataggaaaaccagcctcctaatcatagaaataagcgtatacttcaaatactctgagt 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 497 gaaataggaaaaccagcctcctaatcatagaaataagtgtatacttcaaatactctgagt 438
Query: 361 tgggttgtcacttttt---tttttcttgaaacaatta 394
||||||||| |||||| ||||||||||||||||||
Sbjct: 437 tgggttgtccctttttctttttttcttgaaacaatta 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 797
Length adjustment: 9
Effective length of query: 385
Effective length of database: 788
Effective search space: 303380
Effective search space used: 303380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
