CCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGC
GGAATTCTCAGTTATTTCAATCCCTTTTTTGATTGGGTATTTGGTTTTTT
GGTGACAGAAAACAAAGCTTGGTTGACCTCCTGTACATGTGTTTCTTTTG
CAGGGTTGCTTTACAGTCTACAGGATAAATGGTGCCATCACTTGAGCCTT
TGTTTGAGAATCAAGACACAAATTTTTCTCCTGCTGATGAACCAATCTAC
ATGCCACCAATTAGACCTCATTTTATCTAAGGTACCAATCATAATCCATG
CATTCCATTAATGTACATATACTTCTATGCAAATCTTCTCTTTCCACATA
AAACTTAAAGTCATTAATAATTTTAAGGTTGCATACATTGGTAGGAATTT
ATTAGTCACATTCATTTTAAGAATATTCTTGTTTTGTAGTTGCCATAAAA
ATACTGGTTTGATTCATACATAAAGATGGTCCTGACATAGATTTCTTCTA
TCATTTGATTAAGCCTATGGCAGCAAATCTGAAGATTTGAGGTTATCACA
TTATTTAACTGCAACCAAATATATGACAAATCTGCTCAAATCAGATCCTA
AATCGCTACCGCAATCAAATTTTGCAGCATATTTATCATAAATCTGACCC
TTTTTTAACCTCCCGTTTTGTCTGGTAAAATCTCACCCTCATAGGCCCAC
AATTAATTGCCACCTAATATTCCTTATTCATCTTAACTCCTACACTCTTC
CCTCCCCATACACTCCGCGTACCTATTCTCTTTC

TCCCGATGAAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAAAATACTAAACAGGAAGCCA
CAATTTGCAGTAAGAGGACCCATTCTGGATCTGAAGACCCTGCACTGCTT
CAGTCTCTGAGTTTATATGAAGTTTGCTTGTGCTGATTTAAAGAGTCTTG
TTTGTCTTGGTTATTCCCCATTCTTTCTAAATCTTCAATTATTTTTGTCT
CTTCTCCTGCAGGGTTTGTTGATAAAAAATGGCAGGGAGTTAATGAAGAA
ATCCTATTTAGGGTTGAGTGCTACGGAGTCTCATCGTCTGTGAATTGTCT
GGCTGTGGTTCTTTGTATTTGTTCCCATCTACTGTAGATGGGAATTTCTC
TCGTGGCGATAAAACAAGACAATTAAATCACTGAGACTCGTTTTATGGTT
ACCCAATTTTTACCTCCATACAATACCTTTTTTTTTTCAATTCCATCTTG
CCCCCTGTGATACCCATCCTCACGCTCCTGATTCATTAAACTATACCCCC
CTCTTTTCCTTTTCTCATCCATCGTCTCTTTTTTCCCCCCTCCTTTCTTC
TTCCTTTCCCCCCCCTCTCCTTTTTTTTTTTTCCTTCCCTCCCACCTCTT
TTCACCTCCCCATATCCTTTTTTCCCCCTCCCTCCCTTTTTTTCCCCCCT
TCCCTTTTATTTTCCTTCCCCCCTTTCCCTTTTTTTTTCCCCCTTCCCTT
TATTTTACCCCCTTTTTTTT

Query= MSMg01no475_k14.b1 MSMg01no475_k14.b1 CHROMAT_FILE:
MSMg01no475_k14.b1 PHD_FILE: MSMg01no475_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:31 2005
         (458 letters)



>mm_chr13_87124992_87125847
          Length = 856

 Score =  793 bits (410), Expect = 0.0
 Identities = 443/454 (97%), Gaps = 6/454 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagtta-tttca-atcccttttttgattgggtatttggttttttggtgacaga 62
           ||||||||||||| ||| | |||||||||| ||||||||||||||||||||| |||||||
Sbjct: 205 gaattctcagttacttt-atatcccttttt-gattgggtatttggttttttgatgacaga 262

                                                                       
Query: 63  aaacaaagcttggttgacctcctgtacatgtgtttcttttgcagggttgctttacagtct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaacaaagcttggttgacctcctgtacatgtgtttcttttgcagggttgctttacagtct 322

                                                                       
Query: 123 acaggataaatggtgccatcacttgagcctttgtttgagaatcaagacacaaatttttct 182
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 acaggataaatggtgccatcacttgagc-tttgtttgagaatcaagacacaaatttttct 381

                                                                       
Query: 183 cctgctgatgaaccaatctacatgccaccaattagacctcattttatctaaggtaccaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctgctgatgaaccaatctacatgccaccaattagacctcattttatctaaggtaccaat 441

                                                                       
Query: 243 cataatccatgcattccattaatgtacatatacttctatgcaaatcttctctttccacat 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 442 cataatccatgcattccattaatgtacatatactgctatgcaaatcttctctttccacat 501

                                                                       
Query: 303 aaaacttaaagtcattaataattttaaggttgcatacattggtaggaatttattagtcac 362
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 502 aaa-cttaaagtcattaataattttaaggttgcatacactggtaggaatttattagtcac 560

                                                                       
Query: 363 attcattttaagaatattcttgttttgtagttgccataaaaatactggtttgattcatac 422
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcattttaagaatattctttttttgtagttgccataaaaatactggtttgattcatac 620

                                             
Query: 423 ataaagatggtcctgacatagatttcttctatca 456
           ||||||||||||||||||||| ||||||||||||
Sbjct: 621 ataaagatggtcctgacatagttttcttctatca 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 856
Length adjustment: 10
Effective length of query: 448
Effective length of database: 846
Effective search space:   379008
Effective search space used:   379008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)