BAC Information

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BAC

Clone NameMSMg01-476A15
Chromosome13 (Build37)
Map Location 117,782,741 - 117,783,022
singlet/doubletsinglet
Overlap geneParp8
Upstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169
Downstream geneLOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1, LOC100041695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476A15.T7 (MSMg01no476_a15.b1)MSMg01-476A15.TJ (MSMg01no476_a15.g1)
ACCAG557724AG557725
length774737
length of high quality
(start - end)
243 (73 - 315)282 (328 - 609)
definitionCHROMAT_FILE: MSMg01no476_a15.b1 PHD_FILE: MSMg01no476_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:01 2005CHROMAT_FILE: MSMg01no476_a15.g1 PHD_FILE: MSMg01no476_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATAATTTGCGGCCGNNAAACGAATCACTTTTCAAACAGGATCCGCGG
AATTCACCAATAACATAACAATATGCAATGTAGCCTGTACTGAAGATTTC
TCTCTCAGTGGGATTCCCTAGCTCTTTCATGGTAAACCCACCTATTCGCT
AGGCCATTGTGTATGGGTGAGACTGGCTACTGCTTCAAGTAAACACTCTG
CAGACCAGCCCTGAGCTATTCCGGCTTGGTTCTTTTGTAATGCCTAATTA
TTTTCACTGTCTCTACCAAGCTCCTCGGCTTCAAGCATTTTCTAGGACAT
CGGAACACTGGTGTTTGCTTATTTATGNCAGAATTCAATCTTAAAAGGCA
CTTATAATAAGATAACCACTAAAATAGAGCACGTGGATCCATACACCATA
TTACCACAGGGATAGGGTATGAATATACAGGTTATGAGAACGCCAAAGTT
CCAGGAGGCGAGCCTCTGTGAAACTCTATGCTTCATGAGTGCTCCCAGGC
CTCTCTGCCTGCCCAGCAAACTTCACTGGAGTGTCCGTACCACATTCTTC
AGTGACACACTTTCCTCCATCAAGTCCACTCCCTTTTACCCTCTTCCCTC
GCTTCTTTTTCTATTGCCTCCATTTATTTAACCTTCTGCTTCTTACCCTC
CTTTACCGATCCTTTTTTGTTTTCCTTCTTTTCCCTATCACCCTTACACA
TTTGACTTTGTTTTTGCCCACCCACCCACTTATATTTAGCGTTCCGCCTT
CGGATACTCCACACCCCTATACTN
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGATATTAGAAATAAAAGG
TAGGAACCCTGCTGGAAATTAATATTTGAACACGTAAGACTTGGATATCA
ATTCCTTTTTAATATAAATTCTAATGTAAGAAGAAATTCTCCGTGGCATC
ATCTGGGGAATTTCCACTGACTCAGAGATTTAAAAAAAAAAAAAAAAAAT
TCATAAACTCCAGAAACAGCAAAAAGTGTTCCAGTGCGTGCTGCTAGGTC
TCAGGTGCTCTGCCTCATTTTTGATAGTGAGGATTATAGATGTAATGATT
ATCCAGAGGAGATTTTTGCAAGATTAATAAGAACAGCTAGAAAAGCATAA
GACAGGAGCCTAAATAAGCATTATCACATTAATTGAACATGGTTCCCATT
GGCAGGAAGCAGAATGTTTCAGAAATGATGACAAACCTCATCTTATTCAA
TATAAGAAACGGCCCACAGATTCCAAACAGTGAAGAGAAGAAGAGAGCTG
AGCTTGAGCTCTAATTATTACTCATTTAAATAATTGCCTCGAAGCTTTAT
TTGGGAAATTCAGAACACAGTTGTTTACTTCCTTATAGCGGATCCAATTA
AGTTATACAACTTTCTGCGCTACAGGAAGACTAAGAGTCTTATTATAATT
GAGGCTGGGAAATCATAGAGTACTCCGGAACCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_a15.g1 MSMg01no476_a15.g1 CHROMAT_FILE:
MSMg01no476_a15.g1 PHD_FILE: MSMg01no476_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:01 2005
         (282 letters)



>mm_chr13_117782541_117783222
          Length = 682

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%), Gaps = 2/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggattatagatgtaatgattatccagaggagatttttgcaagattaataagaacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggattatagatgtaatgattatccagaggagatttttgcaagattaataagaacagc 260

                                                                       
Query: 61  tagaaaagcataagacaggagcctaaataagcattatcacattaattgaacatggttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaaagcataagacaggagcctaaataagcattatcacattaattgaacatggttccc 320

                                                                       
Query: 121 attggcaggaagcagaatgtttcagaaatgatgacaaacctcatcttattcaatataaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggcaggaagcagaatgtttcagaaatgatgacaaacctcatcttattcaatataaga 380

                                                                       
Query: 181 aacggcccacagattccaaacagtgaagagaagaagagagctgagcttgagctctaatta 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aacggcccacagattccaaacagtgaagagaagaagagagttgagcttgagctctaatta 440

                                                      
Query: 241 ttactcatttaaataattgcctcgaa-gctttatttgggaaat 282
           |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 441 ttactcatttaaataattgcct-gaaagctttatttgggaaat 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)