BAC Information

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BAC

Clone NameMSMg01-476E08
Chromosome13 (Build37)
Map Location 45,313,799 - 45,314,404
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204
Downstream geneLOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476E08.T7 (MSMg01no476_e08.b1)MSMg01-476E08.TJ (MSMg01no476_e08.g1)
ACCAG557902AG557903
length752753
length of high quality
(start - end)
614 (45 - 658)450 (76 - 525)
definitionCHROMAT_FILE: MSMg01no476_e08.b1 PHD_FILE: MSMg01no476_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:20 2005CHROMAT_FILE: MSMg01no476_e08.g1 PHD_FILE: MSMg01no476_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGGTTACCCCACCCTGTCCTTTCCAGTTCAGTGGTACTGGAACC
TGTGTTTTGCTTTCGTTTGCTTTGGTTAACTTTGGTTGAGTGTTGTTGAA
CTTCAGACAAAGAAGGTGATCCCAGGAAGAGAATTTCCAGCTATTCTGGA
GCACAGAGCCAGTGAAGCTATTAGTCTTTGCTGGAGACATGCCCATTAGT
GTTCTTATGCCAATAAGCTTTCTGTGCCCCGGCTCCTGGTCAGCCATCTT
CTATTCACTATGTGGCTTGTTTTATCTACCTGACTCAAGCACCATTAATG
TTCTTTTTCAATATTTTTTAAAAAAAGGTAAGGATGACTGTATTCAAAGG
GAGCCAGGGTAACAGAAATAGGAATCCTGCAGTGGGGTCTCTAATTATGG
GAGAAACAGAGAGTTCTGATCTCTCCTTCCTTTTACCTTGCAGATGCTTC
AACCCACTAACCCATTTCAGCAGACATCTACTCTTTAGTATCTAGGAGAA
TGGAGGAAGCTGTAGGATGGACAGAAGAGAAATATTGCCAGGAACTTGGC
GATTGGGTGAAGATGACCCTCTCAGTGTTTCTGTGACTTCATTTGCTCCA
TGAACTGTAGGGTCCGAACGGGTGCGTGTTCCCCGACCCCTGCTCCCTGC
AAAGTGCGACTTGGATTCGTTCCTCTCTTCCCTGTGCAGTGCACGCTTTG
AN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTACACTGGGGCACAGAGCCTTC
ACAGGACCCAGGGCCTCTCCTCCCATTGATGACTGACTGGGCCATCCTCT
GCTACATATATATGCAGCTGGAGCCATGAGTCCCACCATGTGTACTCTTT
GGTTGGTGGTTTAGTCCCTGAGTTCTGGAGGTACTGAGTTAGTTCATATT
GTTGTTCCTCCTATGGGGCTGCAAACCCCTTAAGCTCCTTGGGTCCTTTC
TGTAGCTCCTCCATTGGTTTTTTTGTGCTCAGNCCAATGGATGGCTATGA
GCATCCACTTCTGTTCTAAGGCAGGGCTAGCCAGGTTGCAGAGGTGGCAG
AGCAGAGGTGGGGCTGTTCCACAGACCCCTGTGCACCTTTCCTGCTAGAG
GAGAGCTTGTCTCCAGGAAGTGCTCTGACCCTGGAACTCAGATGACTGTT
GGTTTTAAAGGAAGAGAAAATACAGACGCTCATGAGGGAGAATGCCACGG
TAAGATGGACACAGAAACTAATATGGCGTATTGACCCGCCACAGGATGTC
AATCCCTGGTAGTTCCTACTATGAGACAATCCTGAAACCAATTTTCCTTT
CGAAAGTTTTTTATAATCAAGCCCTTCCTCCTGTTTTTCCAGCCTCTATA
GTTTGCGACAGACTTTGGTTTTTTGGTCTGTCCAGTTTTGTACTTTTTCC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_e08.b1 MSMg01no476_e08.b1 CHROMAT_FILE:
MSMg01no476_e08.b1 PHD_FILE: MSMg01no476_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:20 2005
         (614 letters)



>mm_chr13_45313597_45314608
          Length = 1012

 Score = 1033 bits (534), Expect = 0.0
 Identities = 591/618 (95%), Gaps = 19/618 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggggttacc----ccaccctgtcctttccagttcagtggtactggaacctgt 59
           ||||||||||||   ||    |||||||||||||||||||||||||||||||||||||| 
Sbjct: 203 ggaattctgggg---ccaagtccaccctgtcctttccagttcagtggtactggaacctgc 259

                                                                       
Query: 60  gttttgctttcgtttgctttggttaactttggttgagtgttgttgaacttcagacaaaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttttgctttcgtttgctttggttaactttggttgagtgttgttgaacttcagacaaaga 319

                                                                       
Query: 120 aggtgatcccaggaagagaatttccagctattctggagcacagagccagtgaagctatta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggtgatcccaggaagagaatttccagctattctggagcacagagccagtgaagctatta 379

                                                                       
Query: 180 gtctttgctggagacatgcccattagtgttcttatgccaataagctttctgtgccccggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtctttgctggagacatgcccattagtgttcttatgccaataagctttctgtgccccggc 439

                                                                       
Query: 240 tcctggtcagccatcttctattcactatgtggcttgtttta--tctacctgactcaagca 297
           ||||||||||||||||||||||| ||||||||||||    |  |||||||||||||||||
Sbjct: 440 tcctggtcagccatcttctattcgctatgtggcttg----aaatctacctgactcaagca 495

                                                                       
Query: 298 ccattaatgttctttttcaatattttttaaaaa-aaggtaaggatgactgtattcaaagg 356
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 496 ccattaatgttctttttcaatattttt-aaaaagaaggtaaggatgactgtattcaaagg 554

                                                                       
Query: 357 gagccagggtaacagaaataggaatcctgcagtggggtctctaattatgggagaaacaga 416
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gagccagggtaacaggaataggaatcctgcagtggggtctctaattatgggagaaacaga 614

                                                                       
Query: 417 gagttctgatctctccttccttttaccttgcagatgcttcaacccactaacccatttcag 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 615 gagttctgatctctccttccttttaccttgcagatgcttcaacccactaacccatttctg 674

                                                                       
Query: 477 cagacatctactctttagtatctaggagaatggaggaagctgtaggatggacagaagaga 536
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tagacatctactttttagtatctaggagaatggaggaagctgtaggatggacagaagaga 734

                                                                       
Query: 537 aatattgccaggaacttggcgattgggtgaagatgaccctctcagtgtttctgtgacttc 596
           ||||||||||||||||    ||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 735 aatattgccaggaact----gattgggcgaagatggccctctcagtgtttctgtgacttc 790

                             
Query: 597 atttgctccatgaactgt 614
           ||||||||||||||||||
Sbjct: 791 atttgctccatgaactgt 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1012
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1002
Effective search space:   605208
Effective search space used:   605208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)