MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-476H24
Chromosome	13 (Build37)
Map Location	98,580,523 - 98,580,987
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream gene	Rgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC625662 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625662
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	1700029F12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66479 MGI:1913729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG620648 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620648 MGI:3646298
definition	note : predicted gene, EG620648 pseudo : _no_value

name	5730427N09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59050 MGI:1913883
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039663 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039663
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs

name	Gfm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320806 MGI:2444783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hexb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15212 MGI:96074
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Enc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13803 MGI:109610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667676 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 203 ESTs, 23 Proteins pseudo : _no_value

name	LOC100039691 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039691
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100039704 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	EG328314 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328314 MGI:3644417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100039526 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039526
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC100039740 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 2409 ESTs, 5 Proteins

name	Rgnef (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110596 MGI:1346016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667703 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667703
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Utp15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105372 MGI:2145443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankra2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68558 MGI:1915808
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667718 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667718 MGI:3643284
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Btf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218490 MGI:1202875
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15229 MGI:1347463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039827 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039827
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 mRNAs, 1341 ESTs, 22 Proteins pseudo : _no_value

name	LOC100039665 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039665
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 64 ESTs, 4 Proteins

name	LOC100039854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC218501 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:218501
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 44 ESTs, 11 Proteins pseudo : _no_value

name	Tmem174 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68344 MGI:1915594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem171 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380863 MGI:2685751
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC669675 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Fcho2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218503 MGI:3505790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC625662 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264621 GeneID:625662
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : similar to ankyrin repeat domain 11 transcript_id : XM_127483.7

name	1700029F12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124107619 GeneID:66479 MGI:1913729
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700029F12 gene transcript_id : NM_025585.2

name	1700029F12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124107620 GeneID:66479 MGI:1913729
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700029F12 gene transcript_id : NM_001080777.1

name	5730427N09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801962 GeneID:59050 MGI:1913883
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730427N09 gene transcript_id : NM_021552.3

name	LOC100039663 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264626 GeneID:100039663
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs product : hypothetical protein LOC100039663 transcript_id : XM_001473707.1

name	Gfm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328424 GeneID:320806 MGI:2444783
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G elongation factor, mitochondrial 2 transcript_id : NM_177266.3

name	Hexb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754185 GeneID:15212 MGI:96074
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hexosaminidase B transcript_id : NM_010422.1

name	Enc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254358 GeneID:13803 MGI:109610
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectodermal-neural cortex 1 transcript_id : NM_007930.3

name	LOC100039691 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264630 GeneID:100039691
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039691 transcript_id : XM_001473741.1

name	LOC100039704 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264632 GeneID:100039704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : similar to F36H12.3 transcript_id : XM_001473765.1

name	EG328314 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395639 GeneID:328314 MGI:3644417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, EG328314 transcript_id : XM_488691.3

name	LOC100039526 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264624 GeneID:100039526
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001473057.1

name	LOC100039740 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264634 GeneID:100039740
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 2409 ESTs, 5 Proteins product : similar to ribosomal protein transcript_id : XM_001473806.1

name	Rgnef (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123702009 GeneID:110596 MGI:1346016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho-guanine nucleotide exchange factor transcript_id : NM_012026.2

name	Utp15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130641 GeneID:105372 MGI:2145443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast) transcript_id : NM_178918.3

name	Ankra2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963688 GeneID:68558 MGI:1915808
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat, family A (RFXANK-like), 2 transcript_id : NM_023472.1

name	EG667718 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395641 GeneID:667718 MGI:3643284
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG667718 transcript_id : XM_992017.1

name	Btf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56605978 GeneID:218490 MGI:1202875
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : basic transcription factor 3 transcript_id : NM_145455.2

name	Foxd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679836 GeneID:15229 MGI:1347463
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box D1 transcript_id : NM_008242.1

name	LOC100039665 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264628 GeneID:100039665
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 64 ESTs, 4 Proteins product : similar to protein translocation complex beta subunit transcript_id : XM_001473300.1

name	LOC100039854 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264639 GeneID:100039854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039854 transcript_id : XM_001474039.1

name	Tmem174 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037110 GeneID:68344 MGI:1915594
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 174 transcript_id : NM_026685.1

name	Tmem171 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71037372 GeneID:380863 MGI:2685751
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 171 transcript_id : NM_001025606.1

name	LOC669675 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264642 GeneID:669675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC669675 transcript_id : XM_001474101.1

name	Fcho2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328382 GeneID:218503 MGI:3505790
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FCH domain only 2 transcript_id : NM_172591.2

name	LOC625662 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264622 GeneID:625662
definition	codon_start : 1 product : hypothetical protein protein_id : XP_127483.7

name	1700029F12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385034 GeneID:66479 MGI:1913729
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC66479 isoform 2 protein_id : NP_079861.1

name	1700029F12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124107621 GeneID:66479 MGI:1913729
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC66479 isoform 1 protein_id : NP_001074246.1

name	5730427N09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66773175 GeneID:59050 MGI:1913883
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : L-name related protein product : TGF beta-inducible nuclear protein 1 protein_id : NP_067527.2

name	LOC100039663 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264627 GeneID:100039663
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473757.1

name	Gfm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328425 CCDS:CCDS26708.1 GeneID:320806 MGI:2444783
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : G elongation factor, mitochondrial 2 protein_id : NP_796240.2

name	Hexb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754186 CCDS:CCDS26709.1 GeneID:15212 MGI:96074
definition	GO_component : GO:0001669 - acrosome [Evidence IDA]; GO:0005764 - lysosome [Evidence IDA]; GO:0016020 - membrane [Evidence IDA] GO_function : GO:0004563 - beta-N-acetylhexosaminidase activity [Evidence IGI] [Evidence IDA] [Evidence IMP]; GO:0043169 - cation binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence IDA] [Evidence ISS] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IMP] [Evidence IGI]; GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0044267 - cellular protein metabolism [Evidence IMP]; GO:0007338 - fertilization (sensu Metazoa) [Evidence IMP]; GO:0006689 - ganglioside catabolism [Evidence IMP]; GO:0030203 - glycosaminoglycan metabolism [Evidence IGI]; GO:0006687 - glycosphingolipid metabolism [Evidence IMP]; GO:0007626 - locomotory behavior [Evidence IGI] [Evidence IMP]; GO:0007040 - lysosome organization and biogenesis [Evidence IMP] [Evidence IGI]; GO:0008049 - male courtship behavior [Evidence IMP]; GO:0008152 - metabolism [Evidence IEA]; GO:0042552 - myelination [Evidence IGI]; GO:0050905 - neuromuscular physiological process [Evidence IMP]; GO:0009313 - oligosaccharide catabolism [Evidence IMP]; GO:0048157 - oogenesis (sensu Mammalia) [Evidence IMP]; GO:0007341 - penetration of zona pellucida [Evidence IMP]; GO:0008654 - phospholipid biosynthesis [Evidence IMP]; GO:0050885 - regulation of balance [Evidence IGI] [Evidence IMP]; GO:0031323 - regulation of cellular metabolism [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IGI]; GO:0019915 - sequestering of lipid [Evidence IMP] [Evidence IGI]; GO:0019953 - sexual reproduction [Evidence IMP]; GO:0001501 - skeletal development [Evidence IGI] codon_start : 1 product : hexosaminidase B protein_id : NP_034552.1

name	Enc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254359 CCDS:CCDS26710.1 GeneID:13803 MGI:109610
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 product : ectodermal-neural cortex 1 protein_id : NP_031956.3

name	LOC100039691 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264631 GeneID:100039691
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473791.1

name	LOC100039704 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264633 GeneID:100039704
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473815.1

name	EG328314 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94395640 GeneID:328314 MGI:3644417
definition	codon_start : 1 product : hypothetical protein protein_id : XP_488691.2

name	LOC100039526 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264625 GeneID:100039526
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473107.1

name	LOC100039740 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264635 GeneID:100039740
definition	codon_start : 1 product : similar to ribosomal protein protein_id : XP_001473856.1

name	Rgnef (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123702010 GeneID:110596 MGI:1346016
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : Rho interacting protein 2; Rho specific exchange factor product : Rho-guanine nucleotide exchange factor protein_id : NP_036156.2

name	Utp15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725776 CCDS:CCDS26712.1 GeneID:105372 MGI:2145443
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 product : UTP15, U3 small nucleolar ribonucleoprotein, homolog protein_id : NP_849249.1

name	Ankra2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963689 CCDS:CCDS26713.1 GeneID:68558 MGI:1915808
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : ankyrin repeat, family A (RFXANK-like), 2 protein_id : NP_075961.1

name	EG667718 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94395642 GeneID:667718 MGI:3643284
definition	codon_start : 1 product : hypothetical protein protein_id : XP_997111.1

name	Btf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56605979 CCDS:CCDS26714.1 GeneID:218490 MGI:1202875
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : basic transcription factor 3 protein_id : NP_663430.2

name	Foxd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679837 GeneID:15229 MGI:1347463
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : HNF-3/forkhead homolog, brain factor 2 product : forkhead box D1 protein_id : NP_032268.1

name	LOC100039665 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264629 GeneID:100039665
definition	codon_start : 1 product : similar to protein translocation complex beta subunit protein_id : XP_001473350.1

name	LOC100039854 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264640 GeneID:100039854
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474089.1

name	Tmem174 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037111 CCDS:CCDS26715.1 GeneID:68344 MGI:1915594
definition	codon_start : 1 product : hypothetical protein LOC68344 protein_id : NP_080961.1

name	Tmem171 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037373 CCDS:CCDS26716.1 GeneID:380863 MGI:2685751
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : transmembrane protein 171 protein_id : NP_001020777.1

name	LOC669675 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264643 GeneID:669675
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474151.1

name	Fcho2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369848 GeneID:218503 MGI:3505790
definition	GO_process : GO:0051301 - cell division [Evidence IEA] codon_start : 1 product : Fcho2 protein_id : NP_766179.1

name	LOC667703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667703
definition	number : 4 pseudo : _no_value

name	LOC667703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667703
definition	number : 3 pseudo : _no_value

name	LOC667703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667703
definition	number : 2 pseudo : _no_value

name	LOC667703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667703
definition	number : 1 pseudo : _no_value

name	LOC667676 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264623 GeneID:667676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 203 ESTs, 23 Proteins product : similar to uracil DNA glycosylase pseudo : _no_value transcript_id : XR_030992.1

name	LOC100039827 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264638 GeneID:100039827
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 mRNAs, 1341 ESTs, 22 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_031521.1

name	LOC218501 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264641 GeneID:218501
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 44 ESTs, 11 Proteins product : similar to calponin 3, acidic pseudo : _no_value transcript_id : XR_031538.1

clone name	MSMg01-324N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041O10
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-476H24.T7 (MSMg01no476_h24.b1)	MSMg01-476H24.TJ (MSMg01no476_h24.g1)
ACC	AG558076	AG558077
length	786	791
length of high quality (start - end)	511 (40 - 550)	248 (71 - 318)
definition	CHROMAT_FILE: MSMg01no476_h24.b1 PHD_FILE: MSMg01no476_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:38 2005	CHROMAT_FILE: MSMg01no476_h24.g1 PHD_FILE: MSMg01no476_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:38 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAATCCGCGGAATTCT GTCAGATGTACCTGCCTTTCTTGGGCTGTCTACCAGTGCGGATCCTTGGC TTGCAACCTTGCCTGCTCTGGAGTTAATGTGCTGATTTTCTGCTTCAGCC TTCTGTTGCAGTCTCTTACTTGTCTGACTCACATTCCCTTTGTCGCTGTG ATTGTATACACTTTAAATTTCTGTATTCTTATTTTAAATAGCCTTCGTGG TTAGCGAATATAAACACACTTGGTCAATATGCCATATTTAACAAGAAGCT TATGAATAATTTTGATATTTTTTTTAATTTTATAATGCTTGCTATAAAAT GGACAATCTCTATAAACACCATTATCTCAAGGTGGTTAAATGTACAGGAA AAAAAAACATTAAAAAGAAAATGTGAGCGGTATTACCTTTCCACACAAAG AGACAGGATAACGGTGATCTTTAGTTCCTCTGTAACCCTATTCTTCCCGA GTGTCTATGTACAGCAAAAAAGACTTTTGTGACCTAAATAAATAATTACT ATAAATAGTTTTCACAGTAGAGGATATAAGCCATTAAGAGATTATCTCAG TGTGAAGTGTTTTTTCTGAAGCATGCTGTTGCAATTGGAATTGTGCAATA ATTGGATACTTCTGATTTTACTGGTTCGTGCAGAATAATATTATTAATCC CACCTGTGCCTGTTGTTCTTAAATTATCTTTCCTAACTCCTCTTCCAAAA CCCCCCATATTTTTTATTTTTTATTCGCTGTGAATG	TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG CACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC CTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGT CTGGCGGTTCCTCAGAAAATGGTACATAGTACTACCGGAGGATCCAGCAA TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGAC ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG GAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT ACATCTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTTATG AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT AACACATTCACAAAGAAACTTCACACAAATGTATTCCCTGGCAACCGGAT ATTACCCTCTAATCTTATGTTTCCCACGAAATAGATATTATTTTGCTAAA CCCTTGGAACCCCTTAAACAATGAATACTCGAACCTGGTGAACCCATGTT CCCTCCTCTATACTTCGGGCAATATATCTCCCCTGGTAATG
quality values	Open. Hide. 14 14 20 22 37 34 39 39 37 31 17 17 9 9 10 19 19 39 39 44 30 26 28 25 23 21 19 10 10 10 12 7 6 6 6 10 7 9 13 15 24 30 30 30 31 31 31 31 31 42 31 31 30 30 21 21 9 9 9 9 9 11 11 11 16 16 32 34 37 46 41 41 43 44 57 53 53 53 53 53 53 53 53 50 50 50 53 59 59 53 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 54 47 47 57 47 44 57 42 42 30 42 44 57 68 68 68 68 68 68 68 68 68 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 68 68 68 68 44 32 19 10 9 9 9 13 19 44 44 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 50 50 50 59 50 50 47 43 31 25 17 15 11 13 12 13 13 15 13 19 20 34 41 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 37 43 39 41 48 48 43 47 42 48 47 47 47 47 47 57 57 57 59 59 68 59 59 59 68 68 68 68 68 68 68 68 68 59 59 59 59 57 59 59 59 57 57 57 57 57 59 59 54 54 54 59 48 48 48 43 59 47 57 48 42 42 35 35 37 43 43 57 57 57 47 43 43 42 42 37 30 30 44 44 57 57 57 57 57 48 48 47 47 39 42 43 46 43 48 48 54 48 43 43 43 48 48 48 48 48 48 48 43 39 34 34 34 37 43 50 59 44 33 33 33 33 33 43 47 47 47 41 41 41 41 37 37 41 41 44 47 47 44 43 39 28 28 30 31 30 36 36 39 39 39 47 47 47 35 35 37 39 39 39 39 36 36 36 34 33 13 13 13 28 28 46 43 39 37 30 30 22 21 12 11 11 25 22 28 22 30 30 37 37 39 36 29 37 15 13 8 8 8 8 10 10 20 21 21 19 25 15 8 8 8 8 15 13 13 13 13 14 14 9 9 9 13 8 8 9 9 10 10 10 13 9 11 11 11 11 11 12 12 16 12 15 15 13 11 11 15 10 10 11 12 12 13 13 11 13 14 25 17 8 8 7 8 11 9 7 8 8 8 8 12 18 21 12 10 9 9 12 12 10 10 12 9 14 14 20 18 17 15 13 13 8 8 8 6 6 7 8 8 8 8 10 13 10 11 11 16 21 11 11 11 16 21 17 9 9 9 10 9 8 8 8 8 8 8 8 13 8 8 11 10 9 8 8 8 10 8 9 10 10 8 8 8 10 10 13 8 8 9 9 15 12 11 9 9 9 9 13 13 14 12 12 12 12 13 11 14 11 11 8 8 6 6 6 6 13 12 10 10 8 6 8 8 8 8 8 8 9 9 8 6 6 6 6 7 8 13 8 8 8 9 9 10 10 10 15 19 21 16 12 9 9 9 9 8 14 7 6 6 6 8 8 8 8 8 6 6 6 8 8 6 6	Open. Hide. 8 8 8 8 8 19 19 16 16 15 31 31 37 37 39 37 37 37 37 32 24 30 34 34 39 25 25 9 7 7 7 8 7 9 9 10 9 9 9 12 16 26 39 33 33 33 37 36 33 50 50 50 59 59 29 27 11 8 8 6 6 6 8 10 9 9 12 12 14 17 23 27 33 33 33 48 48 57 57 38 50 50 50 50 42 57 53 53 53 53 50 50 50 50 50 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 31 35 35 35 35 39 39 46 57 57 68 68 68 68 50 50 50 50 68 68 68 68 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 50 50 46 46 46 50 50 50 54 57 57 57 57 54 54 54 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 59 57 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 44 40 40 27 20 20 20 15 34 34 68 59 59 59 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 54 57 59 68 68 59 59 59 48 48 48 48 53 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 31 23 18 9 6 6 6 6 6 6 9 9 9 11 11 18 27 41 59 59 59 50 50 53 53 53 53 50 50 50 53 53 53 53 57 59 59 59 59 59 59 59 54 47 40 31 23 20 20 20 41 41 42 43 48 43 44 44 48 54 57 57 57 48 57 48 54 54 57 59 59 59 68 59 59 68 68 59 59 48 54 57 57 57 57 57 57 57 57 57 57 59 57 57 57 59 59 59 59 59 48 48 48 48 57 57 57 57 42 42 39 39 39 43 43 57 57 57 57 57 57 57 57 57 57 43 43 43 43 43 43 43 43 43 47 47 47 46 46 41 41 41 44 34 28 32 20 20 31 32 39 42 42 41 43 43 39 34 37 41 41 41 41 46 37 37 37 37 31 30 43 34 34 28 28 28 34 36 47 30 30 17 17 16 21 24 30 30 30 30 37 26 26 15 15 14 14 14 30 28 32 40 39 39 39 39 39 41 43 43 39 36 32 32 32 30 18 11 11 11 11 11 19 25 18 17 16 24 24 25 29 20 19 10 11 11 15 15 23 18 14 14 11 16 12 10 11 11 10 10 20 28 28 31 31 30 17 16 13 9 9 10 8 9 12 16 15 23 23 18 16 11 11 12 14 15 23 17 15 15 14 14 13 21 17 18 16 17 21 16 9 11 10 12 9 9 11 14 11 15 16 18 10 10 14 13 13 8 8 8 10 9 10 9 11 12 12 10 10 9 8 10 11 10 8 8 8 8 8 9 11 10 8 8 10 12 12 13 14 14 10 9 9 10 10 10 10 11 11 11 10 9 9 9 7 7 8 8 11 8 6 8 8 10 8 8 10 10 10 7 7 8 8 8 8 10 9 10 9 9 10 10 8 8 8 10 10 10 8 8 10 10 10 10 12 12 15 14 8 10 10 8 8 8 8 8 8 10 12 10 10 12 8 8 8 8 8 8 8 10 8 8 8 6 6 6 8 11 10 8 8 8 8 8 8 11 8 8 8 8 8 10 8 8 8 6 6 6 6 6 8 11 6 6 6 6 8 8 9 10 11 8 8 8 10 12 10 10 10 8 8 8 8 9 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no476_h24.b1 MSMg01no476_h24.b1 CHROMAT_FILE:
MSMg01no476_h24.b1 PHD_FILE: MSMg01no476_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:38 2005
         (511 letters)



>mm_chr13_98580523_98581433
          Length = 911

 Score =  745 bits (385), Expect = 0.0
 Identities = 445/471 (94%), Gaps = 12/471 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtcagatgtacctgcctttcttgggctgtctaccagtgcggatccttggcttg 64
           ||||||||||||||| |  |||||||||||||||||||||||| | ||||||| ||||||
Sbjct: 465 gaattctgtcagatgaagttgcctttcttgggctgtctaccagcgtggatcctgggcttg 406

                                                                       
Query: 65  caaccttgcctgctctggagttaatgtgctgattttctgcttcagccttctgttgcagtc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 405 caaccttgcctgctctggagttaatgtgctgattttctgcttcagccttctgttgcagcc 346

                                                                       
Query: 125 tcttacttgtctgactcacattccctttgtcgctgtgattgtatacactttaaatttctg 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 345 tcttacttgtctgactcacattccctttgtcgctctgattgtatacactttaaatttctg 286

                                                                       
Query: 185 tattcttattttaaatagccttcgtggttagcgaatataaacacacttggtcaatatgcc 244
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 285 tattcttattttaaatagccttcgtggggagcgaatataaacacacttggtcaatatgcc 226

                                                                       
Query: 245 atatttaacaagaagcttatgaataattttgat---attttttt---taattttataatg 298
           |||||||||||||||||||||||||||||||||   |      |   |||||||||||||
Sbjct: 225 atatttaacaagaagcttatgaataattttgataaaa------tagctaattttataatg 172

                                                                       
Query: 299 cttgctataaaatggacaatctctataaacaccattatctcaaggtggttaaatgtacag 358
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cttgctataaaatggacagtctctataaacaccattatctcaaggtggttaaatgtacag 112

                                                                       
Query: 359 gaaaaaaaaacattaaaaagaaaatgtgagcggtattacctttccacacaaagagacagg 418
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gataaaaaaacattaaaaagaaaatgtgagcggtattacctttccacacaaagagacagg 52

                                                              
Query: 419 ataacggtgatctttagttcctctgtaaccctattcttcccgagtgtctat 469
           |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 51  ataacggtgatctttagttcctctgtaaaccttttcttcccgagtgtctat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information