BAC Information

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BAC

Clone NameMSMg01-476K21
Chromosome13 (Build37)
Map Location 17,707,564 - 17,707,996
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476K21.T7 (MSMg01no476_k21.b1)MSMg01-476K21.TJ (MSMg01no476_k21.g1)
ACCAG558213AG558214
length807827
length of high quality
(start - end)
453 (41 - 493)130 (122 - 251)
definitionCHROMAT_FILE: MSMg01no476_k21.b1 PHD_FILE: MSMg01no476_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:51 2005CHROMAT_FILE: MSMg01no476_k21.g1 PHD_FILE: MSMg01no476_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTGCCCACTTTCCCAAGTATGGAAATAATTTTCCCTAGTTAAAATGATT
ACAGAAGTAATGAGAATGGCCACTAGAAAAATTTATATTTACTTTTACTA
TATATCATAATATTGACCATTTATTGAGTGGTTACTATGTGAATGAGTAT
CATATTAACAGTTGCTATGATATTATTTTATAAATAATATAAAACTGATA
ATTTAAATATCAGCCAATTTATTAATATGCCAATTCCATAGAATACAACT
TTTGATATTAATATTACTTTTTATTTCTAATTGCAGAGAATATAGAACAT
AATTAAGGTTGCTCAGTTTGAATGCCAAGACTTATATAGCCAGCCTTGTG
ATTCTGAGAAACCATTAACCTCTTTTGAGTCTAAATGAGTGATACTCTAA
AATGGGAAGAGATCTGCTTTGCTTTCTTTATAGATTGCTAGTGAGTCTGA
GATGTAATTAATAAAATTTACAAACTGTGCATCAATCCATAGATATCACA
GCATATTAAATCATTACCTATTTTCACATACTTTTGGTATCTTTTCAGGT
CTCTGGCATAACTAGAGCATGTCCTTTTCTGAAATCATTTACTTGAATGT
AAACCCCCCTTCGGTGGCCTCCGTTTTGTTTTCTTTCCTTTTCCGCCCCC
TTTGTCATACCCTTTTTTTTCCCCTTCCCCTTTCCTTTTTTTTTTTTATT
TTCGCCCTCCCTCGCCTCTTTTCCCCTCTCCCCTTCCTATTCCCTCCCCC
CCCTCTN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATATTCCTGATCTCTCCAATACTTTTAACATGAGGAGT
GTTGTATTTTGTCTTATGCTCTTTTCTACATCTAAGAAGATGATCATGTG
ATTTTTTTCTTTGAGTTTAATTATGTAGTGGATTACATTAATGGATTTTC
TTATATTAAACCAACTTTGCATCCCTGGGATGAATCCTACTTGATCATGT
TTTATGATGGCTTTGATGCTCCTGCATTCAGTTTGCCACAACTTTATCGA
GTATTTTTGCCACGCTTTTCGCTGCGTTTGACCGCCCCGACCGCTAAAAC
CCAGGCCTTTTTTTTTTCCCCCCTTTTTTTGTGGAAGGGGGCCCCTTTTT
CTTTATTTTTTCCCTTTTCCCCCCTTCTTTTTATTTTTTTCCCTCTTTCT
TTTTTTTCTCTATCCACTCTCTTTTCTCCTTTTTTTCTCTTCCTTTCCTT
GCTTTCTTTTTCTATTTCCGCACTATTTTGTGTCTCTTCCTTCTCACCAT
TTTTTTTTTCTTATTCTTTTTTCCATTTTCTTTTTTTCCCCCCTTTCTTC
TCTTCTTTTCTTCCCCTGTTATTCTTCTTCTTTTTTCTTTTCCCTCCCTT
TCTTCTCTTTCCCCTTCTTTTTATTTTCTCTCATCCCCTTCCTGTGCTCT
CTTTTTTTTTTTCCGTTTTCCCTACCCCTATATTCTTTCTTCCCTTTTTC
CCCCCCCTTGCCCTTTTTTTTTTTTTTTTTTCTCCACCTCCTTTTCTTCC
CTCCTCTTCACCCTTTTTTCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_k21.b1 MSMg01no476_k21.b1 CHROMAT_FILE:
MSMg01no476_k21.b1 PHD_FILE: MSMg01no476_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:51 2005
         (453 letters)



>mm_chr13_17707144_17707996
          Length = 853

 Score =  791 bits (409), Expect = 0.0
 Identities = 427/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 21  ttcccaagtatggaaataattttccctagttaaaatgattacagaagtaatgagaatggc 80
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 853 ttcccaagtatggaaataattttccctagttcaaatgattacagaagtaatgagaatggc 794

                                                                       
Query: 81  cactagaaaaatttatatttacttttactatatatcataatattgaccatttattgagtg 140
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 793 cactagaaaaatttatatttacttttactatatatcataatattgaccattttttgagtg 734

                                                                       
Query: 141 gttactatgtgaatgagtatcatattaacagttgctatgatattattttataaataatat 200
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 733 gttactatgtgaatgagtatcatattaacagttgctatgatattatcttataaataatat 674

                                                                       
Query: 201 aaaactgataatttaaatatcagccaatttattaatatgccaattccatagaatacaact 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaaactgataatttaaatatcagccaatttattaatatgccaattccatagaatacaact 614

                                                                       
Query: 261 tttgatattaatattactttttatttctaattgcagagaatatagaacataattaaggtt 320
           |||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||
Sbjct: 613 tttgatattaatattactttttaagtcaaattgcagagaatatagaacataattaaggtt 554

                                                                       
Query: 321 gctcagtttgaatgccaagacttatatagccagccttgtgattctgagaaaccattaacc 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gctcagtttgaatgccaagacttatatagccagccttgtgattctgagaaaccattaacc 494

                                                                       
Query: 381 tcttttgagtctaaatgagtgatactctaaaatgggaagagatctgctttgctttcttta 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcttttgagtctaaatgagtgatactctaaaatgggaagagatctgctttgctttcttta 434

                        
Query: 441 tagattgctagtg 453
           |||||||||||||
Sbjct: 433 tagattgctagtg 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)