BAC Information

Click to search

BAC

Clone NameMSMg01-477F08
Chromosome13 (Build37)
Map Location 109,408,870 - 109,542,364
singlet/doubletdoublet
Overlap genePde4d, EG668144, LOC621663
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
Downstream geneLOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477F08.T7 (MSMg01no477_f08.b1)MSMg01-477F08.TJ (MSMg01no477_f08.g1)
ACCAG558709AG558710
length722754
length of high quality
(start - end)		691 (32 - 722)645 (80 - 724)
definitionCHROMAT_FILE: MSMg01no477_f08.b1 PHD_FILE: MSMg01no477_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:44 2005CHROMAT_FILE: MSMg01no477_f08.g1 PHD_FILE: MSMg01no477_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:45 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(109,408,870 - 109,409,521)(109,541,720 - 109,542,364)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGGAATTC
TTACAGGTTTCCGAATTAAGAAATAATCTATTTATCTATATAGCATCACT
ACAAGACAGTACATCTTCATTGATCTATAGAGGTCTGCTCAAATCTGTGG
GGATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCATATTAA
TAGCAGGAATATTTCATAAAATAAAACTCTCCTGGGCATTTCCTACAGGA
GCAAATCCATTGTAGATTTTAATTCAAGGCAGACCCATCTTAGGAATATT
ACCTGCTAGTTTTTAGCTTCTCCTTATTGGCTCCTGGTACTTGACTTATT
AGAGTACATCTAAAGATAAATTATTCTGACTTCTACAGTGTATGTTTTTC
ACCAGGGAAGATCCACTATCAGTTCCATTGATATTCAGCATCAGAACTTC
ATGATTATTAGAGGCTAATAGTCTCCATTTAAAGAGATTGCCTTAAAAAC
AACTAATTTTGATGTAGAAATCTCAACTTCAAAGAAAAATGGATTTTTCT
AGTGTGTTTTCTTTCTTCTTATGTCTAAGACAGCATATCACACTGACTAT
GCCCAATAAAGGCATTTGGAATCACAGAATAAAAAAAAAGAACTAATTTT
AGTAGATTTGTAGAGTTAAGAAAAAAACAACTCTCCCTTTGGAACTGAAA
ACCTTGAAGTGAAATATTTTTT

NCCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTACTAATCTGCTTTGGA
TAAGCCCTTAGATAGCATGACAAGAACAGTTCTATGTGTTATTTCACAGG
GTGCTTAAATAGACTCAGTGAGCTGCATAGCGTAGCACAGTGAGCCGTAC
TTCCCATGCTACATAGAGAAGAAAATGCAACCTCTGCTCTAAAAGAATGG
GAAATGATTTGGGAGAATGAAATACAGTATCAAGAATGATGAAGCACCAG
GGTCTTCGCCTTAGTTGTAGAATAAGATGAAATGAAGTGAAGCCCATAAA
ATAAAATTTAGATGAGCAGGGGAGAAATGAGAAACAGGGCTCCAGGCAAC
CTCTGCACAGAAAGAAGTATGTAGGCAGATGTAGAAAACCAAGAATAAGC
ATATCTAGTTTCCAAGCAGGAGGCCCCTTGGATTCAATGGGCAGGCTTTC
TCTACAAGAGGAGTTACAAGACATGAATACACATTAAAGTGTGGACTACT
CAGAGCTCATCAAGCCTCAGCATTGATGTCAACCTTAAACAGTTCTCAGC
AGATTCTGAGAGGGTGACTCAGCTGAATCAGGAGGCAATGGTGGAACTCA
GACACTGGCGTATAGAATTTCAAAGATATACTTAAGGATCCCAGAAGATG
CTGTGTTGTCCCCATCCTGCATATGTATTTGGNCTTTGTTTATTAAGGTT
TGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_f08.b1 MSMg01no477_f08.b1 CHROMAT_FILE:
MSMg01no477_f08.b1 PHD_FILE: MSMg01no477_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:44 2005
         (691 letters)



>mm_chr13_109408630_109409721
          Length = 1092

 Score = 1013 bits (524), Expect = 0.0
 Identities = 629/680 (92%), Gaps = 29/680 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  ggaattcttacaggtttccgaattaagaaataatctatttatctatatagcatcactaca 72
           |||||| ||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaattgttacaggattaagaattaagaaataatctatttatctatatagcatcactaca 300

                                                                       
Query: 73  agacagtacatcttcattgatctatagaggtctgctcaaatctgtggggatgtgtatgtg 132
           ||||||||||| || ||||||| | |||| ||||||||||| ||||||||||||| ||||
Sbjct: 301 agacagtacatttttattgatcgacagagatctgctcaaatatgtggggatgtgtgtgtg 360

                                                                       
Query: 133 tgtgtgtgtgtgtgtgtgtgtgtgtgtatcatattaatagcaggaatatttcataaaata 192
           |||||||||||||||||||||||||||                |    | |    || ||
Sbjct: 361 tgtgtgtgtgtgtgtgtgtgtgtgtgt----------------g----tgt----aagta 396

                                                                       
Query: 193 aaactctcctgggcatttcctacaggagcaaatccattgtagattttaattcaaggcaga 252
           ||    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 397 aa----tcctgggcatttactacaggagcaaatccattgtagattttaattcaaagcaga 452

                                                                       
Query: 253 cccatcttaggaatattacctgctagtttttagcttctccttattggctcctggtacttg 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cccatcttaggaatattacctgctagtttttagcttctccttattggctcctggtacttg 512

                                                                       
Query: 313 acttattagagtacatctaaagataaattattctgacttctacagtgtatgtttttcacc 372
           ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 513 acttattagagcacatctaaagataaatcattctgacttctacaatgtatgtttttcacc 572

                                                                       
Query: 373 agggaagatccactatcagttccattgatattcagcatcagaacttcatgattattagag 432
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 573 agggaagatccactatcagttccattgatattcagcatcagatcttcatgattattagag 632

                                                                       
Query: 433 gctaatagtctccatttaaagagattgccttaaaaacaactaattttgatgtagaaatct 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gctaatagtctccatttaaagagattgccttaaaaacaactaattttgatgtagaaatct 692

                                                                       
Query: 493 caacttcaaagaaaaatggatttttctagtgtgttttctttcttcttatgtctaagacag 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 caacttcaaagaaaaatggatttttctagtgtgttttctttcttcttatgtctaagacag 752

                                                                       
Query: 553 catatcacactgactatgcccaataaaggcatttggaatcacagaat-aaaaaaaaagaa 611
           ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 753 catatcacactgaatatgccaaataaaggcatttggaatcacagaattaaaaaaaaagaa 812

                                                                       
Query: 612 ctaattttagtagatttgtagagttaagaaaaaaacaactctccctttggaactgaaaac 671
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 813 ctaattttagtagatttgtagagttaagaaaaaaacaattctccctttggaactgaaaac 872

                               
Query: 672 cttgaagtgaaatatttttt 691
           ||||||||||||||||||||
Sbjct: 873 cttgaagtgaaatatttttt 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space:   736842
Effective search space used:   736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no477_f08.g1 MSMg01no477_f08.g1 CHROMAT_FILE:
MSMg01no477_f08.g1 PHD_FILE: MSMg01no477_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:45 2005
         (645 letters)



>mm_chr13_109541520_109542564
          Length = 1045

 Score = 1170 bits (605), Expect = 0.0
 Identities = 635/645 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtactaatctgctttggataagcccttagatagcatgacaagaacagttctatgtgt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tctgtactaatctggtttggataagcccttagatagcatgacaagaacagttctatgtgt 786

                                                                       
Query: 61  tatttcacagggtgcttaaatagactcagtgagctgcatagcgtagcacagtgagccgta 120
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 catttcacagggcgcttaaatagactcagtgagctgcatagcgtagcacagtgagccgta 726

                                                                       
Query: 121 cttcccatgctacatagagaagaaaatgcaacctctgctctaaaagaatgggaaatgatt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttcccatgctaaatagagaagaaaatgcaacctctgctctaaaagaatgggaaatgatt 666

                                                                       
Query: 181 tgggagaatgaaatacagtatcaagaatgatgaagcaccagggtcttcgccttagttgta 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 665 tgggagaatgaaatacagtatcaagaatgacgaagcaccagggtcttcgccttagttgta 606

                                                                       
Query: 241 gaataagatgaaatgaagtgaagcccataaaataaaatttagatgagcaggggagaaatg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaagaagatgaaatgaagtgaagcccataaaataaaatttagatgagcaggggagaaatg 546

                                                                       
Query: 301 agaaacagggctccaggcaacctctgcacagaaagaagtatgtaggcagatgtagaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agaaacagggctccaggcaacctctgcacagaaagaagtatgtaggcagatgtagaaaac 486

                                                                       
Query: 361 caagaataagcatatctagtttccaagcaggaggccccttggattcaatgggcaggcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caagaataagcatatctagtttccaagcaggaggccccttggattcaatgggcaggcttt 426

                                                                       
Query: 421 ctctacaagaggagttacaagacatgaatacacattaaagtgtggactactcagagctca 480
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 425 ctctacaagaggagttacaggacatgaatacacattaaagtgtggactgctcagagctca 366

                                                                       
Query: 481 tcaagcctcagcattgatgtcaaccttaaacagttctcagcagattctgagagggtgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcaagcctcagcattgatgtcaaccttaaacagttctcagcagattctgagagggtgact 306

                                                                       
Query: 541 cagctgaatcaggaggcaatggtggaactcagacactggcgtatagaatttcaaagatat 600
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 cagctgaatcaggaggcaatggtggaactcagacactggggtatagaatttcaaagatat 246

                                                        
Query: 601 acttaaggatcccagaagatgctgtgttgtccccatcctgcatat 645
           |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 245 acttaaggattccagaagatgctgtgttgtccccatcctgcatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |