BAC Information

Click to search

BAC

Clone NameMSMg01-478H05
Chromosome13 (Build37)
Map Location 112,501,972 - 112,502,396
singlet/doubletsinglet
Overlap geneMier3
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666
Downstream geneMap3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478H05.T7 (MSMg01no478_h05.b1)MSMg01-478H05.TJ (MSMg01no478_h05.g1)
ACCAG559564AG559565
length734740
length of high quality
(start - end)
418 (317 - 734)174 (71 - 244)
definitionCHROMAT_FILE: MSMg01no478_h05.b1 PHD_FILE: MSMg01no478_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:11 2005CHROMAT_FILE: MSMg01no478_h05.g1 PHD_FILE: MSMg01no478_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCCAG
GCTTACTAAAGCTATGTAGNGAGACCCTGTCTCAAAGAAAAGGGAGAGGA
ATAGGGACAGGGCCAGAGGCAGGGAGAGCAAAGACAGTCTGATACAGGGC
TGTTTGGGTAGAGAAGGCCAGCACATTACTAAAGAAAGAATGGAGCCCAG
AAATGTAAGCACTGATCTTTGACCAAGGAGTCAGGCAGTTCTTTGGAGGA
AGAAGAGTGAGAACAAACAAACTCAAACCAGACACACACATCTAGCCCTT
GTATCGTAATGTTGTTAGTTCCTGCCGACACTGAGCTAGGGCATGGACTT
CCCGCACACTTGCTCACACACGTGTGCACAGCCTCCCTGTGGGTGTCCCA
GGCTGGAACGGGATCCTTGCTGAATGTGGGCAGTCTGCTTGCTATGTATG
TCATTGTTCTCCTCAGTCTAGACTTTCGATCCGACTCACGGCTGACTCCT
TTATAGTGTAAAGCCCTCCCATCTTCCTACGCAGTCTCTGCAGTCACTCA
GTTTTAATAACAGTTTTGACTTTCTCACTGTCTGGGGTGAACATTCTCGG
ATTACCTTTCAGTTAGCATTAAACATTCAGGCTATTCCTCATTCATTTAT
GCTATGCATAAGGCACTGATTGTAACCGTTGTAATGACTGTAGTGAGCAA
TCTCTCCACCAGCTCACCTTATCTTTCTGAATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATATTTCAAGCTTGTACAACAACAACAACA
GCAATAACAACAACAACAACAACAACCCGTCTCTTACTTATGGAGCTCTC
TCTTTGGTCCGAGGAGCTCTGTACTGACAGATCCCCTCATAATTTCCCCA
AAACGCAACCATGTGTGAATAGATTTTGAGTAAGCAGGGTTGCATCCACG
AATGAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCACAACTTCCAT
GCCTAAGCGAACTGTTGAAAGTACGTTTCGATTTCTGACTGTGTTAGCCT
GGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAA
CATGTTACTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTC
TGAGATGCTCGTTCGGCTATGGCGTAAGCCTAATCCGTAGGCACGACTTT
TCAAGTCTCGGAAAGTATCTTCAATCTGCATTCGCTTCGAATAAATATTA
ACAAGCTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGCTAGAAT
CCATGGCTCCTTTGCCGACGCTGAGTAGATTTTACGTGACGGGTGGCGAC
AATGAGTCCGTGTCGAGCGCTGATTTTTTCGGCCTTTAGAGCGAGATTTA
TACAATACAACTTGGCATGAGATTGGATTGCTTTTAGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_h05.b1 MSMg01no478_h05.b1 CHROMAT_FILE:
MSMg01no478_h05.b1 PHD_FILE: MSMg01no478_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:11 2005
         (418 letters)



>mm_chr13_112501724_112502542
          Length = 819

 Score =  723 bits (374), Expect = 0.0
 Identities = 410/426 (96%), Gaps = 9/426 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcctgccgacactgagctagggcatggacttcccgcacacttgct------cacaca 54
           ||||||||||||||||||||||||||||||||||||||||||||||||      ||||||
Sbjct: 673 agttcctgccgacactgagctagggcatggacttcccgcacacttgctcacacacacaca 614

                                                                       
Query: 55  cgtgtgcacagcctccctgtgggtgtcccaggctggaacgggatccttgctgaatgtggg 114
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cgtgtgcacagcctccctgtcggtgtcccaggctggaacgggatccttgctgaatgtggg 554

                                                                       
Query: 115 cagtctgcttgctatgtatgtcattgttctcctcagtctagactttcgatccgactcacg 174
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 553 cagtctgcttgctatgtatgtcattgttatcctcagtctagactttctatccgactcacg 494

                                                                       
Query: 175 gctgactcctttatagtgtaaagcc--ctcccatcttcctacgcagtctctgcagtcact 232
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 493 gctgactcctttatagtgtaaagccctctcccatcttcctacgcagtctctgcagtcact 434

                                                                       
Query: 233 cagttttaataacagttttgactttctcactgtctggggtgaacattctcggattacctt 292
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 433 cagttttaataacagttttgactttctcactgtctggggtggacattctcggattacctt 374

                                                                       
Query: 293 tcagttagcattaaacattcaggctattcctcattcatttatgctatgcataaggcactg 352
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 373 tcagttagcattaaacattcaggctattcctcattcatttatgctat-tataaggcactg 315

                                                                       
Query: 353 attgtaaccgttgtaatgactgtagtgagcaatctctccaccagctcaccttatctttct 412
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 attgtaacggttgtaattactgtagtgagcaatctctccaccagctcaccttatctttct 255

                 
Query: 413 gaatga 418
           ||||||
Sbjct: 254 gaatga 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space:   331290
Effective search space used:   331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)