Query= MSMg01no479_d09.b1 MSMg01no479_d09.b1 CHROMAT_FILE:
MSMg01no479_d09.b1 PHD_FILE: MSMg01no479_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:07 2005
(687 letters)
>mm_chr13_79592503_79593589
Length = 1087
Score = 1181 bits (611), Expect = 0.0
Identities = 644/655 (98%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 4 ttaaccaaagactattcatagtcagtgtctcttgtctcagcaaagtatatctactgacct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttaaccaaagactattcatagtcagtgtctcttgtctcagcaaagtatatctactgacct 595
Query: 64 caacttttgaatttttcaatataatgaaatatgtttccaaactataaatatattacttag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 caacttttgaatttttcaatataatgaaatatgtttccaaactataaatatattacttag 535
Query: 124 cttgtaaactatacaaaaatagttatgaaataggatttgatgtatgacacaatttgtcta 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 534 cttgtaaactatacaaaaatagttatgaaataggatttgatgtatgacacaatttgacta 475
Query: 184 cttattgaaccaagtaacatattgttactatgtaataaatataagaaaaatattgggtat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cttattgaaccaagtaacatattgttactatgtaataaatataagaaaaatattgggtat 415
Query: 244 atttttctttttatattgaatcatgtgtgtgaattaactctgaaactttgacataaatct 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 414 atttttctttttatattgaatcatgtgtgtgaattaactctgaaactttgacataaattt 355
Query: 304 ctgttaactgtagaaaacttgagataatggaaaaagtctattttaagttaagattaagac 363
|||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 354 ctgttaacagtagaaaacttgagatgatggaaaaagtctattttaagttaagactaagac 295
Query: 364 gtgaggaagcaagagtggggattaagaagttagaaacccttgctgctcaggaagatttat 423
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 294 gtgaggaagctagagtggggattaagaagttagaaacccttgctgctcatgaagatttat 235
Query: 424 ctgtgtttctcacccagcatccattgtttgttaattctagtttcacggattatgactccc 483
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 234 ctgtgtttctcacccagcatccattgtttgttaattctagtttcatggattatgactccc 175
Query: 484 tcttctggactctatgagtactgcatgtaagtgttgtacatacatgcaggcaagacaggc 543
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tcttctggaatctatgagtactgcatgtaagtgttgtacatacatgcaggcaagacaggt 115
Query: 544 atatacacacagtaaaaataaataaatgttttatttattaaaagaagtatgactggaaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 atatacacacagtaaaaataaataaatgttttatttattaaaagaagtatgactggaaaa 55
Query: 604 aaatggctcagttgttaaagtctaggatcacatccaaaaatagaagtatgtatga 658
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 aaa-ggctcagttgttaaagtctaggatcacatccaaaaatagaagtatgtatga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_d09.g1 MSMg01no479_d09.g1 CHROMAT_FILE:
MSMg01no479_d09.g1 PHD_FILE: MSMg01no479_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:07 2005
(569 letters)
>mm_chr13_79454682_79455650
Length = 969
Score = 1050 bits (543), Expect = 0.0
Identities = 567/585 (96%), Gaps = 16/585 (2%)
Strand = Plus / Plus
Query: 1 tcctgtatataaccgtgtaccattctagtatggtatattttcattatagttttggattaa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgtatataaccgtataccattctagtatggtatattttcattatagttttggattaa 260
Query: 61 tagtgtatagaagttgtttgtttggtctttggggacaaacactataattcatttttatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgtatagaagttgtttgtttggtctttggggacaaacactataattcatttttatta 320
Query: 121 ctggaacctattaaagtctaatcataataggtgccattatcttaaaataaggagttcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaacctattaaagtctaatcataataggtgccattatcttaaaataaggagttcttc 380
Query: 181 actttttgggtaaagttttacttgattgcctctctctctctctctctctctctctctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttttgggtaaagttttacttgattgcctctctctctctctctctctctctctctctc 440
Query: 241 tttctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg------------ 288
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 500
Query: 289 ----atacaaaagattcaggtataaaataacatttaaaaatagatagctcccaggatcca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgatacaaaagattcaggtataaaataacatttaaaaatagatagctcccaggatcca 560
Query: 345 aggagatgattttagccaaaatgcgcagagaagggggagaaagaacctgtaaagaccacc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggagatgattttagccaaaatgcgcagagaagggggagaaagaacctgtaaagaccacc 620
Query: 405 tccagcagattggcacagactccagtcaagggattggggcactcacccatttcaaaattt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccagcagattggcacagactccagtcaagggattggggcactcacccatttcaaaattt 680
Query: 465 taaacccagaaatgtttctgtccaaaggaataaaggggacagaaatggaatagagactga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaacccagaaatgtttctgtccaaaggaataaaggggacagaaatggaatagagactga 740
Query: 525 aggaaaaggcatgctgggactgccccacctggggatccatgatct 569
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggaaaaggcatgctgggactgccccacctggggatccatgatct 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
