Query= MSMg01no479_m16.b1 MSMg01no479_m16.b1 CHROMAT_FILE:
MSMg01no479_m16.b1 PHD_FILE: MSMg01no479_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:54 2005
(559 letters)
>mm_chr13_89746419_89747377
Length = 959
Score = 1040 bits (538), Expect = 0.0
Identities = 550/554 (99%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 1 gctatttaaattctacttgtagcaagactgagccccagtacaagtttctagagaggcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gctatttaaattctacttgtagcaagactgagccccagtacaagtttctagagaggcaaa 658
Query: 61 atttgaatgtgaaaggatcaaaaaacattcctcacataaaagtccatttaaaaaactcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 atttgaatgtgaaaggatcaaaaaacattcctcacataaaagtccatttaaaaaactcaa 598
Query: 121 agccctcaagctcttttcattacaggtatcaataagaccttcttctccaccaaagcgaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agccctcaagctcttttcattacaggtatcaataagaccttcttctccaccaaagcgaca 538
Query: 181 gcataaaaattcgtcaaacacaggaagtcatttgccatcaatgatacctttgctgaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gcataaaaattcgtcaaacacaggaagtcatttgccatcaatgatacctttgctgaattt 478
Query: 241 aaaccctgtctgcacccccttacaagaagaagagtttgttaatgctttaaaactttcgtc 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 477 aaaccctgtctgcacccccttacaagaagaggagtttgttaatgctttaaaactttcgtc 418
Query: 301 atttgaagcctgacagtttgctatttcccgattgcacagaaacactgttacttttgacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atttgaagcctgacagtttgctatttcccgattgcacagaaacactgttacttttgacca 358
Query: 361 cttattgcagtatgaatgactgagatcccattcacatgatggaatatatcgtacaaaatg 420
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 357 cttattgcagtaagaatgactgagatcccattaacatgatggaatatatcgtacaaaatg 298
Query: 421 tatcatcaattgccagaactggcatacactgaatattttctccatcatcttagctttaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tatcatcaattgccagaactggcatacactgaatattttctccatcatcttagctttaag 238
Query: 481 tataatatcctatggccctcattaagcatggtgctcctgtgtgtgtgtgtgtgtgtgtgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tataatatcctatggccctcattaagcatggtgctcctgtgtgtgtgtgtgtgtgtgtgt 178
Query: 541 gtgtgtgtgtgtgt 554
|||||||| |||||
Sbjct: 177 gtgtgtgt-tgtgt 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_m16.g1 MSMg01no479_m16.g1 CHROMAT_FILE:
MSMg01no479_m16.g1 PHD_FILE: MSMg01no479_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:54 2005
(394 letters)
>mm_chr13_89578696_89579489
Length = 794
Score = 739 bits (382), Expect = 0.0
Identities = 391/394 (99%)
Strand = Plus / Plus
Query: 1 ctcctgattctcagggtcccagatgcctactacaggctgtccctgtcattgtatgctgtc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctgcttctcagggtcccagatgcctactacaggctgtccctgtcattgtatgctgtc 260
Query: 61 cccagcagaaaataatatggaaacaggaagaactggtttgtacaatgaatactgatgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagcagaaaataatatggaaacaggaagaactggtttgtacaatgaatactgatgtat 320
Query: 121 ggcatgtaaatacaaaatggctgcttccagggatgaaggtaagaaaaaatgcaaataaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcatgtaaatacaaaatggctgcttccagggatgaaggtaagaaaaaatgcaaataaca 380
Query: 181 tgcatcttttctccttggatgaaagtacagatagatatatgtatgactaattctattaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatcttttctccttggatgaaagtacagatagatatatgtatgactaattctattaaa 440
Query: 241 accttaatgttttatatttgctaatccctttcagttactatatatacagaatatctggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accttaatgttttatatttgctaatccctttcagttactatatatacagaatatctggaa 500
Query: 301 tacacacagagatacgtatatacccacacacgcacataaacactcataatttttgtcttc 360
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tacacacacagatacgtatatacctacacacgcacataaacactcataatttttgtcttc 560
Query: 361 ggagtaagcaagtaaagactatacagactttcaa 394
||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagtaagcaagtaaagactatacagactttcaa 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
